Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30991
         (721 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47652| Best HMM Match : Ribosomal_L10e (HMM E-Value=0.0041)         84   1e-16
SB_21942| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.053)          37   0.014
SB_34369| Best HMM Match : Herpes_US9 (HMM E-Value=0.64)               34   0.10 
SB_40410| Best HMM Match : ANF_receptor (HMM E-Value=0)                31   1.2  
SB_28115| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_6123| Best HMM Match : MutS_III (HMM E-Value=1.8e-09)               29   2.9  
SB_4321| Best HMM Match : Ank (HMM E-Value=0)                          29   3.8  
SB_10713| Best HMM Match : Peptidase_C32 (HMM E-Value=3.3)             29   5.0  
SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18)              29   5.0  
SB_33920| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_9876| Best HMM Match : TSNR_N (HMM E-Value=7.6)                     28   6.6  
SB_25165| Best HMM Match : Prominin (HMM E-Value=1.1e-05)              28   8.8  
SB_14136| Best HMM Match : Exonuc_X-T (HMM E-Value=6e-25)              28   8.8  

>SB_47652| Best HMM Match : Ribosomal_L10e (HMM E-Value=0.0041)
          Length = 50

 Score = 83.8 bits (198), Expect = 1e-16
 Identities = 40/50 (80%), Positives = 43/50 (86%)
 Frame = +2

Query: 359 MRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQK 508
           MRGAFGKPQGTVARV IGQ I+S+R+ D  KA  IEALRRAKFKFPGRQK
Sbjct: 1   MRGAFGKPQGTVARVNIGQTIISIRTKDGNKAAAIEALRRAKFKFPGRQK 50


>SB_21942| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.053)
          Length = 659

 Score = 37.1 bits (82), Expect = 0.014
 Identities = 27/81 (33%), Positives = 38/81 (46%)
 Frame = -1

Query: 637 RREVHVPGGTARCSRHWRGGPLHAASQTHHVHTL*NPTSLIRRLLTSGELELGTAQSLDD 458
           +R++HV G + +   H  GG L    Q H +    NP++     L+   LE  TA  +  
Sbjct: 10  KRQLHVRGLSRKWVMH-PGGRLPVKRQLHLISAPVNPSTRFTPTLSRMSLETVTAAPIPT 68

Query: 457 LCLPPVTRAHGHDGLSNANTC 395
                V  A+  DGLSNAN C
Sbjct: 69  QTSRSVALAY--DGLSNANVC 87


>SB_34369| Best HMM Match : Herpes_US9 (HMM E-Value=0.64)
          Length = 361

 Score = 34.3 bits (75), Expect = 0.10
 Identities = 37/164 (22%), Positives = 68/164 (41%), Gaps = 1/164 (0%)
 Frame = -1

Query: 634 REVHVPGGTARCSRHWRGGPLHAASQTHHVHTL*NPTSLIRRLLTSGELELGTAQSLDDL 455
           R  H+P G     +H    P+HA S       + N  +++  +LT GE  L   + +   
Sbjct: 15  RLFHLPSGNRLLVQHPPAFPIHAQSYLTRRRAVFNTMAVLHTVLTKGEQTLFFERPIRRP 74

Query: 454 CLPPVTRAHGHDGLSNANTCYSTLRLAKRTTHPSLEPISSSAR*HFIDADNVERVKSHAD 275
               + +       S  N+ Y+  R  + TT  +L PI++    H   A+++    + A+
Sbjct: 75  RFVALRQC------SLFNSWYNLEREHQITTIAALPPIATLPAGH-QTAESIVETINRAE 127

Query: 274 MELILSAFFTRYLLQQIR-PASKASELSCSYSSDTKCTHSGKSS 146
            E++ +    R    Q+  P  +A  + C     T+C   G+ S
Sbjct: 128 SEILTAKLDPREDRAQVALPKIEALYICCDIVDRTQCLSLGEPS 171


>SB_40410| Best HMM Match : ANF_receptor (HMM E-Value=0)
          Length = 888

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +1

Query: 457 GHRGSAPCQVQVPRTSKVYVSKKWGFTKYERDEF 558
           G +G  PC  QV  T  +Y   K GF  Y+ D F
Sbjct: 368 GAKGFEPCGPQVKITKPLYERLKSGFVTYQEDAF 401


>SB_28115| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 698

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -2

Query: 213 PKPLSSAVHIRRTPSARTVESRQRSLSSYPNRRYGSWDQ 97
           PK  SS V+  RT  AR    ++R++  Y  ++YG W Q
Sbjct: 295 PKFFSSIVYYGRT--ARFDYGKRRNMKRYGKKKYGKWRQ 331


>SB_6123| Best HMM Match : MutS_III (HMM E-Value=1.8e-09)
          Length = 730

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = -1

Query: 316 IDADNVERVKSHADMELILSAFFTRYLLQQIRPASKASELSCSYSSDTK 170
           + A+ V+R+ SH  M+ + S     Y     +PA+K + L C Y+   K
Sbjct: 16  LTAERVQRLLSHTRMKEV-SRICKVYFSSDTKPAAKTNNLLCQYNEIKK 63


>SB_4321| Best HMM Match : Ank (HMM E-Value=0)
          Length = 915

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 17/62 (27%), Positives = 26/62 (41%)
 Frame = +3

Query: 45  RYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVSDEYEQLSSEALEAGR 224
           R CK K   ++R C+G    + R+     K    D+  +C    SDE      E  +  R
Sbjct: 444 RMCKGKGRDETRMCKGEGTDETRMC----KSEGTDETRMCKDEGSDETRMCKDEGTDETR 499

Query: 225 IC 230
           +C
Sbjct: 500 MC 501


>SB_10713| Best HMM Match : Peptidase_C32 (HMM E-Value=3.3)
          Length = 615

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 11/29 (37%), Positives = 21/29 (72%), Gaps = 2/29 (6%)
 Frame = +1

Query: 256 RKGSVPYPHET--SPFPRYPHQ*NVIVRW 336
           +KGS+ +PH +  S +P+YP   +++VR+
Sbjct: 101 KKGSIRFPHSSASSDYPQYPEGRDLVVRF 129


>SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18)
          Length = 1023

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 16/47 (34%), Positives = 19/47 (40%)
 Frame = -3

Query: 410 QCEHVLQYPEACQTHHASQSGAYQLQRTITFY*CG*RGKGEVSCGYG 270
           +C  V Q P AC   + S  GA +       Y C    K  V CG G
Sbjct: 535 KCPDVTQAPVACTNGYYSGDGATECTLCPAGYSCADATKSPVPCGKG 581


>SB_33920| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1278

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = -1

Query: 502 TSGELELGTAQSLDDLCLPPVTRAHGHDGLSNANT--CYSTLRLAKRTT 362
           ++G   + T     D+C+P   + HGH    +ANT  CY  +  A  +T
Sbjct: 73  SAGHYVVRTGNPFTDICIP--CQCHGHSDQCDANTGICYVRIYTADLST 119


>SB_9876| Best HMM Match : TSNR_N (HMM E-Value=7.6)
          Length = 197

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = -1

Query: 529 PTSLIRRLLTSGELELGTAQSLDDLCLPPVTRAHGHDGLSNANTC 395
           P+  +RR   +    LG       L +PPV R   H G+ N +TC
Sbjct: 103 PSLKVRRATVASIESLGEGHRKGSLFMPPVQRGKKH-GVINIHTC 146


>SB_25165| Best HMM Match : Prominin (HMM E-Value=1.1e-05)
          Length = 726

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = +1

Query: 367 CVWQASGYCSTCSHWTTHHV 426
           C W  +G C  C HW   HV
Sbjct: 79  CYWIRTGCCHLCWHWRPLHV 98


>SB_14136| Best HMM Match : Exonuc_X-T (HMM E-Value=6e-25)
          Length = 1597

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = -3

Query: 185 FVGHQVHAQWKVVNVRSLLTQIEDTDLGIRYTPTEPRFRIRFI 57
           FVGH +   ++V+N+     Q+ DT +G+ + P +    +RF+
Sbjct: 465 FVGHGLKKDFRVINILVPKGQVFDT-VGLFHLPRQRYLSLRFL 506


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,854,396
Number of Sequences: 59808
Number of extensions: 569430
Number of successful extensions: 2002
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2000
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)