Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30991
(721 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C) cont... 140 1e-33
At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) / Wi... 138 3e-33
At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Near... 138 3e-33
At4g24120.1 68417.m03462 transporter, putative similar to iron-p... 29 2.3
At5g47870.1 68418.m05914 expressed protein 29 4.1
At3g59190.1 68416.m06599 F-box family protein contains F-box dom... 29 4.1
At5g24280.1 68418.m02856 expressed protein ; expression supporte... 28 5.4
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 27 9.5
At2g18876.1 68415.m02201 expressed protein 27 9.5
At1g33410.1 68414.m04136 expressed protein 27 9.5
At1g19510.1 68414.m02430 myb family transcription factor contain... 27 9.5
>At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C)
contains Pfam profile: PF00826: Ribosomal L10
Length = 221
Score = 140 bits (338), Expect = 1e-33
Identities = 76/143 (53%), Positives = 91/143 (63%), Gaps = 10/143 (6%)
Frame = +3
Query: 18 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVSDEYEQL 197
MGRRPARCYR K KPYPKSR+CRGVPDPKIRI+D+G KR VD+FP CVHLVS E E +
Sbjct: 1 MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60
Query: 198 SSEALEAGRICCNKYLVKNAERIS---SISA*DFTLSTLSASIKCYRALEL-------IG 347
SSEALEA RI CNKY+VK+A + + I F + ++ + C A L G
Sbjct: 61 SSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
Query: 348 SRLGCVVRLASLRVL*HVFALDN 416
LG R+A +VL V DN
Sbjct: 121 KALGTCARVAIGQVLLSVRCKDN 143
Score = 137 bits (332), Expect = 6e-33
Identities = 65/92 (70%), Positives = 71/92 (77%)
Frame = +2
Query: 248 KERGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMS 427
K GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGK GT ARV IGQ ++S
Sbjct: 78 KSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLS 137
Query: 428 VRSSDRWKAQVIEALRRAKFKFPGRQKSTYQR 523
VR D EALRRAKFKFPGRQK R
Sbjct: 138 VRCKDNHGVHAQEALRRAKFKFPGRQKIIVSR 169
Score = 52.4 bits (120), Expect = 3e-07
Identities = 22/47 (46%), Positives = 29/47 (61%)
Frame = +1
Query: 493 PRTSKVYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPL 633
P K+ VS+KWGFTK+ R E+ KLR R+ DG ++ HGPL
Sbjct: 160 PGRQKIIVSRKWGFTKFNRAEYTKLRAMKRIVPDGVNAKFLSNHGPL 206
>At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) /
Wilm's tumor suppressor protein-related similar to tumor
suppressor GI:575354 from [Oryza sativa]
Length = 220
Score = 138 bits (335), Expect = 3e-33
Identities = 61/80 (76%), Positives = 68/80 (85%)
Frame = +3
Query: 18 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVSDEYEQL 197
MGRRPARCYR K KPYPKSR+CRGVPDPKIRI+D+G KR VD+FP CVHLVS E E +
Sbjct: 1 MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60
Query: 198 SSEALEAGRICCNKYLVKNA 257
SSEALEA RI CNKY+VK+A
Sbjct: 61 SSEALEAARIACNKYMVKSA 80
Score = 136 bits (329), Expect = 1e-32
Identities = 65/92 (70%), Positives = 71/92 (77%)
Frame = +2
Query: 248 KERGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMS 427
K GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGK GT ARV IGQ ++S
Sbjct: 78 KSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLS 137
Query: 428 VRSSDRWKAQVIEALRRAKFKFPGRQKSTYQR 523
VR D EALRRAKFKFPGRQK R
Sbjct: 138 VRCKDAHGHHAQEALRRAKFKFPGRQKIIVSR 169
Score = 54.4 bits (125), Expect = 7e-08
Identities = 23/47 (48%), Positives = 31/47 (65%)
Frame = +1
Query: 493 PRTSKVYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPL 633
P K+ VS+KWGFTK+ R +F KLR+E R+ DG ++ HGPL
Sbjct: 160 PGRQKIIVSRKWGFTKFNRADFTKLRQEKRVVPDGVNAKFLSCHGPL 206
>At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Nearly
identical to ribosomal protein L10.e, Wilm's tumor
suppressor homologue, gi|17682 (Z15157), however
differences in sequence indicate this is a different
member of the L10 family
Length = 221
Score = 138 bits (334), Expect = 3e-33
Identities = 61/80 (76%), Positives = 68/80 (85%)
Frame = +3
Query: 18 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVSDEYEQL 197
MGRRPARCYR K KPYPKSR+CRGVPDPKIRI+D+G KR VD+FP CVHLVS E E +
Sbjct: 1 MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPYCVHLVSWEKENV 60
Query: 198 SSEALEAGRICCNKYLVKNA 257
SSEALEA RI CNKY+VK+A
Sbjct: 61 SSEALEAARIACNKYMVKSA 80
Score = 136 bits (329), Expect = 1e-32
Identities = 65/92 (70%), Positives = 71/92 (77%)
Frame = +2
Query: 248 KERGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMS 427
K GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGK GT ARV IGQ ++S
Sbjct: 78 KSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLS 137
Query: 428 VRSSDRWKAQVIEALRRAKFKFPGRQKSTYQR 523
VR D EALRRAKFKFPGRQK R
Sbjct: 138 VRCKDAHGHHAQEALRRAKFKFPGRQKIIVSR 169
Score = 53.6 bits (123), Expect = 1e-07
Identities = 22/47 (46%), Positives = 31/47 (65%)
Frame = +1
Query: 493 PRTSKVYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPL 633
P K+ VS+KWGFTK+ R ++ KLR+E R+ DG ++ HGPL
Sbjct: 160 PGRQKIIVSRKWGFTKFNRADYTKLRQEKRIVPDGVNAKFLSCHGPL 206
>At4g24120.1 68417.m03462 transporter, putative similar to
iron-phytosiderophore transporter protein yellow stripe
1 [Zea mays] GI:10770865; contains Pfam profile PF03169:
OPT oligopeptide transporter protein
Length = 665
Score = 29.5 bits (63), Expect = 2.3
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +3
Query: 243 LVKNAERISSISA*DF-TLSTLSASIKCYRALELIGSRLGCVVRLASLRVL*HVFALDNP 419
L+K+ +S I DF T S K A ++IG+ +GC+V S + F + NP
Sbjct: 468 LIKSVVSVSCILMQDFKTAHYTMTSPKAMFASQMIGTVVGCIVTPLSFFLFYKAFDIGNP 527
Query: 420 S 422
+
Sbjct: 528 N 528
>At5g47870.1 68418.m05914 expressed protein
Length = 199
Score = 28.7 bits (61), Expect = 4.1
Identities = 20/73 (27%), Positives = 30/73 (41%)
Frame = +2
Query: 278 RMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQ 457
R++L PF + +N+ + C+G G+ G + V PI SS
Sbjct: 23 RIKLSPFRTVAVNRGVRCSGG-----GVGGGDAGKKKAVPNSNYVVPIDKFSSSSSITRP 77
Query: 458 VIEALRRAKFKFP 496
+IE LR K P
Sbjct: 78 LIEILRDLNKKIP 90
>At3g59190.1 68416.m06599 F-box family protein contains F-box domain
Pfam:PF00646
Length = 388
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/36 (50%), Positives = 19/36 (52%)
Frame = +3
Query: 132 KRANVDDFPLCVHLVSDEYEQLSSEALEAGRICCNK 239
K AN DF + V V Y LSSEALE CC K
Sbjct: 297 KGANAADFMMGVCNVKTMY--LSSEALEVLTFCCKK 330
>At5g24280.1 68418.m02856 expressed protein ; expression supported by
MPSS
Length = 1634
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 177 SDEYEQLSSEALEAGRICCNKYLV 248
SDEY + SEA GR N++LV
Sbjct: 1431 SDEYRKFQSEAASLGRSITNRFLV 1454
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 27.5 bits (58), Expect = 9.5
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -2
Query: 126 PNRRYG-SWDQVHPDRTSISDTVYFCSTGSISLAGAP 19
PN R+G S+D +PD + D VY G +L P
Sbjct: 53 PNHRFGVSYDDGYPDERLMRDDVYNYPPGHNTLGDLP 89
>At2g18876.1 68415.m02201 expressed protein
Length = 382
Score = 27.5 bits (58), Expect = 9.5
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = -1
Query: 322 HFIDADNVERVKSHADMELILSAFFTRYLLQQIRPASKASELSCSYS 182
+F D DN+E + + L+ S F L P S A +C Y+
Sbjct: 27 NFADVDNLENCIKYLNQSLVTSGFSASLDLFATDPVSIARTCNCVYA 73
>At1g33410.1 68414.m04136 expressed protein
Length = 1459
Score = 27.5 bits (58), Expect = 9.5
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = +3
Query: 99 DP-KIRIFDLGKKRANVDDFPLCVHLVSDEY-EQLSSEALEAGRICCNKYLV 248
DP K + G+ ANV F L ++L++D Y +S+ E RIC ++++
Sbjct: 979 DPTKAATYTRGRLWANVFKFTLDLNLLNDAYCAIISNPDEEIKRICLRRFII 1030
>At1g19510.1 68414.m02430 myb family transcription factor contains
PFAM profile: PF00249 myb-like DNA binding domain
Length = 100
Score = 27.5 bits (58), Expect = 9.5
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 93 VPDPKIRIFDLGKKRANVDDFPL 161
VP PK + D+G K +DDF L
Sbjct: 69 VPLPKYKTVDVGSKSRGIDDFDL 91
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,045,240
Number of Sequences: 28952
Number of extensions: 385902
Number of successful extensions: 1165
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1165
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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