Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30990
(530 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|... 96 3e-21
SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein S3a|S... 94 1e-20
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 28 1.00
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 26 4.0
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo... 26 4.0
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe... 25 5.3
SPAC7D4.06c |alg3||dolichol-P-Man dependent alpha|Schizosaccharo... 25 5.3
SPCC24B10.11c |||THO complex subunit 7 |Schizosaccharomyces pomb... 25 5.3
SPAC664.08c |||traub transciption factor family protein |Schizos... 25 5.3
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe... 25 5.3
SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|ch... 25 9.3
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ... 25 9.3
>SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 95.9 bits (228), Expect = 3e-21
Identities = 46/87 (52%), Positives = 67/87 (77%)
Frame = +1
Query: 4 LCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYA 183
L +F+G+ +T+DKLR +V+KWQT IEA+ +KTTDGY+ RVF IGFT + + +KT YA
Sbjct: 97 LTSFNGLSITSDKLRSLVRKWQTTIEADQTIKTTDGYLCRVFVIGFTRRRANQVKKTTYA 156
Query: 184 QHTQVRAIRKKMCEIITRDVTNSDSGR 264
Q +Q+RAIR+KM ++I ++ T+S S R
Sbjct: 157 QSSQIRAIRQKMFQVI-QNQTSSCSMR 182
Score = 64.5 bits (150), Expect = 9e-12
Identities = 27/52 (51%), Positives = 41/52 (78%)
Frame = +3
Query: 255 LREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELH 410
+RE+V KLIP+ I ++IE+A I+PL++V +RKVK+LK P+ + KL+ELH
Sbjct: 181 MRELVQKLIPEVIGREIERATGSIFPLQNVLVRKVKILKAPKHDAQKLLELH 232
>SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 93.9 bits (223), Expect = 1e-20
Identities = 41/76 (53%), Positives = 59/76 (77%)
Frame = +1
Query: 4 LCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYA 183
L +F+G D+T+DKLR +V+KWQ+ IEAN +KTTDGY+ R+F IGFT++ +KT YA
Sbjct: 97 LTSFNGFDMTSDKLRSLVRKWQSTIEANQTIKTTDGYLCRIFVIGFTSRRVNQVKKTTYA 156
Query: 184 QHTQVRAIRKKMCEII 231
Q +Q+RAI +KM ++I
Sbjct: 157 QSSQIRAIHQKMFQVI 172
Score = 65.3 bits (152), Expect = 5e-12
Identities = 28/52 (53%), Positives = 41/52 (78%)
Frame = +3
Query: 255 LREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELH 410
++E+V KLIP+ I + IEKA + IYPL++V +RKVK+LK P+ + KL+ELH
Sbjct: 181 MKELVQKLIPEVIGRAIEKATNNIYPLQNVFVRKVKILKAPKHDAQKLLELH 232
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 27.9 bits (59), Expect = 1.00
Identities = 14/24 (58%), Positives = 15/24 (62%)
Frame = -3
Query: 402 PSTSRSRNGASSTLSPFGCKHRAE 331
PSTSR RN S LS KHRA+
Sbjct: 736 PSTSRERNNNISELSNSRTKHRAK 759
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 25.8 bits (54), Expect = 4.0
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +1
Query: 1 VLCNFHGMDLTTDKLRWMV--KKWQTLIEANIDVKTT 105
V C H MDL + LR +V ++ L+E + D++TT
Sbjct: 117 VFCLIHKMDLVQEDLRDLVFEERKAILLETSKDLETT 153
>SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1309
Score = 25.8 bits (54), Expect = 4.0
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = +3
Query: 129 LHWFHQ*GLLEPTQDVLRPAHSGQ--SNQKENV 221
LHW+ L+ +Q + P H+GQ S + NV
Sbjct: 1162 LHWYSLMSLMGTSQGICIPRHAGQVLSTPRRNV 1194
>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 882
Score = 25.4 bits (53), Expect = 5.3
Identities = 12/46 (26%), Positives = 21/46 (45%)
Frame = +1
Query: 46 RWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYA 183
++ W L+ T GYV+R GFT+ ++ + K +A
Sbjct: 795 KFATSNWDKLLSRLPVAGTMRGYVVRFVTSGFTHASAIDKIKEFFA 840
>SPAC7D4.06c |alg3||dolichol-P-Man dependent
alpha|Schizosaccharomyces pombe|chr 1|||Manual
Length = 406
Score = 25.4 bits (53), Expect = 5.3
Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Frame = -1
Query: 257 ESELVTSRVMISHIFFLIALT*VCW----A*HVLRWLKESLLVKPMQKTRRTYPSVVFTS 90
ES ++ ++ H+ L+A T W + L +KP+ K + P+ +FT+
Sbjct: 263 ESTSFSTSILFLHVALLVAFTCKHWNKLSRATPFAMVNSMLTLKPLPKLQLATPNFIFTA 322
Query: 89 MLAS 78
+ S
Sbjct: 323 LATS 326
>SPCC24B10.11c |||THO complex subunit 7 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 202
Score = 25.4 bits (53), Expect = 5.3
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +2
Query: 335 ARCLHPKGESVEEAPFRDLEVD 400
+RCL ++V+EA RDLE++
Sbjct: 22 SRCLGFAAQNVDEANLRDLEIE 43
>SPAC664.08c |||traub transciption factor family protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 452
Score = 25.4 bits (53), Expect = 5.3
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +1
Query: 25 DLTTD-KLRWMVKKWQTLIEANIDVKTTDGYVLR 123
D T D +RWM K Q + N+D K + G +R
Sbjct: 351 DSTRDGTVRWMATKKQKQKKENVDTKASKGRKIR 384
>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 719
Score = 25.4 bits (53), Expect = 5.3
Identities = 9/33 (27%), Positives = 20/33 (60%)
Frame = +3
Query: 255 LREVVNKLIPDSIAKDIEKACHGIYPLRDVCIR 353
+R++ ++ + +A ++ C GI +R+VC R
Sbjct: 398 VRKIADEFVTSGVANEV--VCAGINAIREVCAR 428
>SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 684
Score = 24.6 bits (51), Expect = 9.3
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = -3
Query: 225 FTHFLSDCSDLSVLGVARLALAQGVLIGETNAEDT 121
F L +CS L + L + L G+TN++ T
Sbjct: 574 FIEVLKECSQTWKLAQRSIVLIENTLKGKTNSQST 608
>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 673
Score = 24.6 bits (51), Expect = 9.3
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +1
Query: 127 FCIGFTNKDSLSQRKTCY 180
FC G NKD++ K C+
Sbjct: 475 FCDGIVNKDTVMTSKACF 492
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,024,831
Number of Sequences: 5004
Number of extensions: 39376
Number of successful extensions: 118
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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