Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30990
(530 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0043 + 5242496-5242554,5242673-5242778,5243586-5243723,524... 116 9e-27
12_02_0012 - 12309332-12310228,12311087-12311669,12311945-123120... 114 5e-26
02_02_0482 - 10819562-10819813,10820773-10820952,10822073-108221... 113 6e-26
11_01_0558 - 4396750-4396986,4397699-4398050,4398266-4398504,439... 29 2.3
06_03_0290 - 19193707-19193752,19193822-19194090 28 4.1
09_04_0689 - 19480409-19480599,19480780-19480889,19481032-194811... 28 5.4
07_03_1709 - 28873172-28873327,28873519-28873584,28874067-288741... 27 7.1
08_02_0016 - 11262103-11262242,11262278-11262892,11263319-112633... 27 9.4
04_01_0567 - 7263744-7263922,7264020-7264259,7264919-7264982,726... 27 9.4
03_05_1021 - 29750155-29750220,29750342-29750428,29750614-297507... 27 9.4
02_05_1308 + 35601314-35601390,35602486-35602566,35603513-356040... 27 9.4
>03_02_0043 +
5242496-5242554,5242673-5242778,5243586-5243723,
5243794-5243979,5244075-5244275,5244362-5244460
Length = 262
Score = 116 bits (280), Expect = 9e-27
Identities = 52/85 (61%), Positives = 66/85 (77%)
Frame = +1
Query: 1 VLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCY 180
VL NF GM TTDKLR +VKKWQTLIEA++DVKTTDGY+LR+FCIGFT + ++TCY
Sbjct: 96 VLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDGYMLRLFCIGFTKRRPNQVKRTCY 155
Query: 181 AQHTQVRAIRKKMCEIITRDVTNSD 255
AQ +Q+R IR+KM EI+ ++ D
Sbjct: 156 AQASQIRQIRRKMVEIMANQASSCD 180
Score = 69.3 bits (162), Expect = 2e-12
Identities = 29/52 (55%), Positives = 43/52 (82%)
Frame = +3
Query: 255 LREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELH 410
L+E+V+K IP+ I K+IEKA I+PL++V +RKVK+LK P+F++ KLME+H
Sbjct: 181 LKELVSKFIPEVIGKEIEKATSSIFPLQNVFVRKVKILKAPKFDLGKLMEVH 232
>12_02_0012 -
12309332-12310228,12311087-12311669,12311945-12312051,
12313190-12313237,12315139-12315216,12315300-12315500,
12315612-12315797,12315870-12316007,12318311-12318416,
12318529-12318587
Length = 800
Score = 114 bits (274), Expect = 5e-26
Identities = 51/85 (60%), Positives = 65/85 (76%)
Frame = +1
Query: 1 VLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCY 180
VL NF GM TTDKLR +VKKWQTLIEA++DVKTTD Y+LR+FCIGFT + ++TCY
Sbjct: 96 VLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTCY 155
Query: 181 AQHTQVRAIRKKMCEIITRDVTNSD 255
AQ +Q+R IR+KM EI+ ++ D
Sbjct: 156 AQASQIRQIRRKMVEIMVNQASSCD 180
Score = 69.3 bits (162), Expect = 2e-12
Identities = 29/52 (55%), Positives = 43/52 (82%)
Frame = +3
Query: 255 LREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELH 410
L+E+V+K IP+ I K+IEKA I+PL++V +RKVK+LK P+F++ KLME+H
Sbjct: 181 LKELVSKFIPEVIGKEIEKATSSIFPLQNVFVRKVKILKAPKFDLGKLMEVH 232
>02_02_0482 -
10819562-10819813,10820773-10820952,10822073-10822150,
10823056-10823256,10823365-10823550,10823646-10823783,
10824396-10824501,10824634-10824692
Length = 399
Score = 113 bits (273), Expect = 6e-26
Identities = 51/85 (60%), Positives = 64/85 (75%)
Frame = +1
Query: 1 VLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCY 180
VL NF GM TTDKLR +VKKWQTLIEA++DVKTTD Y+LR+FCIGFT + ++TCY
Sbjct: 96 VLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTCY 155
Query: 181 AQHTQVRAIRKKMCEIITRDVTNSD 255
AQ +Q+R IR+KM EI+ + D
Sbjct: 156 AQASQIRQIRRKMVEIMANQASTCD 180
Score = 68.5 bits (160), Expect = 3e-12
Identities = 29/52 (55%), Positives = 43/52 (82%)
Frame = +3
Query: 255 LREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELH 410
L+E+V+K IP+ I K+IEK+ I+PL++V IRKVK+LK P+F++ KLME+H
Sbjct: 181 LKELVSKFIPEVIGKEIEKSTSSIFPLQNVFIRKVKILKAPKFDLGKLMEVH 232
>11_01_0558 -
4396750-4396986,4397699-4398050,4398266-4398504,
4398608-4398709
Length = 309
Score = 29.1 bits (62), Expect = 2.3
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 261 EVVNKLIPDSIAKDIEKACHGIYPLRD 341
++VN IPD + + ++K C IY LR+
Sbjct: 34 QLVNTGIPDDLLERVKKVCSDIYKLRE 60
>06_03_0290 - 19193707-19193752,19193822-19194090
Length = 104
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 5 SATSTAWTSQPISSGGWLKNGRLSSKPTLM 94
+A S A T P S GW+ G S+ P+L+
Sbjct: 67 AAGSAARTRSPSQSNGWITGGSASAMPSLV 96
>09_04_0689 -
19480409-19480599,19480780-19480889,19481032-19481117,
19481410-19481523,19481697-19482066,19482216-19482346,
19482628-19482736,19482901-19483022,19483113-19483219,
19483447-19483551,19483654-19483812,19484071-19484126,
19484200-19484251,19486724-19486821,19487086-19487210
Length = 644
Score = 27.9 bits (59), Expect = 5.4
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = -1
Query: 497 LNTLLNGRLVALRPFRLVSGFPLASTAFAVKFHQLRDLETGPL 369
L+TL +G++V R +SG P A V +H L E GPL
Sbjct: 366 LSTLPDGKIV-----RGLSGLPKQGPAVIVGYHMLLGFELGPL 403
>07_03_1709 -
28873172-28873327,28873519-28873584,28874067-28874127,
28875406-28875462,28876301-28876531,28876685-28876799,
28876897-28877136,28877222-28877316,28877406-28877585,
28877663-28877839,28877920-28878890
Length = 782
Score = 27.5 bits (58), Expect = 7.1
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -3
Query: 375 ASSTLSPFGCKHRAEGRCHGRPSRCPWQWSQESTCSPPP 259
A++ SPF + GRC PS P S S+ +PPP
Sbjct: 79 AAAAHSPFMLSRQNSGRCGTAPS--PLSVSSPSSWAPPP 115
>08_02_0016 -
11262103-11262242,11262278-11262892,11263319-11263397,
11263466-11263612
Length = 326
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -3
Query: 327 RCHGRPSRCPWQWSQESTCSPPP*VRVSDVACNDFTHFLSD 205
R HG RC ++S C+ P +V+ V D T LSD
Sbjct: 209 RIHGLCFRCGEKYSPNHQCAQIPAAQVNVVETIDHTDVLSD 249
>04_01_0567 -
7263744-7263922,7264020-7264259,7264919-7264982,
7265088-7265393,7265652-7265866,7266195-7266489,
7266596-7266655,7267091-7267717,7268510-7268596,
7269292-7269612,7270051-7270224,7272806-7275022
Length = 1594
Score = 27.1 bits (57), Expect = 9.4
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = -3
Query: 300 PWQWSQESTCSPPP*VRVSDVACNDFTH--FLSDCSDLSVLGVA 175
PW W + CSPPP S + +D FLS C VLG A
Sbjct: 9 PW-WLSTTACSPPP-PSSSSFSLSDRLAFLFLSPCPQRVVLGGA 50
>03_05_1021 -
29750155-29750220,29750342-29750428,29750614-29750799,
29750965-29751059,29751179-29751284,29751378-29751452,
29751548-29751679,29751782-29751961,29752371-29752567,
29752651-29752906
Length = 459
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +2
Query: 113 TFYVSSALVSPIRTP*ANARRATPSTLRSEQS 208
T + SAL+SP +P ARRA PS++R + S
Sbjct: 5 TTQLRSALLSPAASPSRRARRA-PSSVRCDSS 35
>02_05_1308 +
35601314-35601390,35602486-35602566,35603513-35604064,
35604998-35605408,35606830-35607544
Length = 611
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +2
Query: 302 HREGLPWHLPSARCLHPKGESVEEAPFRDLEV 397
H +G W L R L P G +V+ RD E+
Sbjct: 212 HHDGEAWRLKIQRLLPPHGITVKHISDRDTEI 243
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,177,417
Number of Sequences: 37544
Number of extensions: 288732
Number of successful extensions: 891
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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