Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30990
         (530 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37698| Best HMM Match : Ribosomal_S3Ae (HMM E-Value=5e-21)          95   2e-20
SB_9937| Best HMM Match : Fer2 (HMM E-Value=6.9)                       27   7.2  
SB_46088| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  

>SB_37698| Best HMM Match : Ribosomal_S3Ae (HMM E-Value=5e-21)
          Length = 147

 Score = 95.5 bits (227), Expect = 2e-20
 Identities = 49/85 (57%), Positives = 60/85 (70%), Gaps = 5/85 (5%)
 Frame = +3

Query: 255 LREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELH-----XXX 419
           L+EVVNKLIPDSI KDIEK+C  IYPL DV IRKVKVLK+P+F+I KLME+H        
Sbjct: 64  LKEVVNKLIPDSIGKDIEKSCQSIYPLHDVHIRKVKVLKKPKFDIGKLMEMHGEASSHAT 123

Query: 420 XXXXXXXXDKSERPEGYEPPVQESV 494
                    K +R EG+EPP+Q++V
Sbjct: 124 TTTTDETGTKIDR-EGFEPPIQDTV 147



 Score = 91.1 bits (216), Expect = 5e-19
 Identities = 40/62 (64%), Positives = 52/62 (83%)
 Frame = +1

Query: 70  TLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTN 249
           TLIEA +DVKTTDGY+LR+FCIGFT +     +KT YA+HTQ++AIRKKM +IITR+V+ 
Sbjct: 2   TLIEAAVDVKTTDGYLLRMFCIGFTKRRQNQIKKTAYAKHTQIKAIRKKMVDIITREVST 61

Query: 250 SD 255
           +D
Sbjct: 62  ND 63


>SB_9937| Best HMM Match : Fer2 (HMM E-Value=6.9)
          Length = 229

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +1

Query: 28  LTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFC 132
           L T +   +  +WQT +  N+ VK TDG +    C
Sbjct: 142 LPTCQTTMLFSEWQTKLVCNLTVKKTDGKMQMYTC 176


>SB_46088| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3306

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 184  QHTQVRAIRKKMCEIITRDVTNSDSGRW 267
            QH QVR  RKK+  +  +  T  ++G W
Sbjct: 1030 QHIQVRTSRKKLSSMRRKIETMEETGEW 1057


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,906,641
Number of Sequences: 59808
Number of extensions: 323969
Number of successful extensions: 917
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1191330434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)