Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30990
         (530 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z32681-6|CAA83605.1|  257|Caenorhabditis elegans Hypothetical pr...    94   5e-20
L25599-3|ABN43087.1|  570|Caenorhabditis elegans Hypothetical pr...    29   1.6  
AC006610-1|AAK85447.4|  360|Caenorhabditis elegans Hypothetical ...    28   4.8  

>Z32681-6|CAA83605.1|  257|Caenorhabditis elegans Hypothetical
           protein F56F3.5 protein.
          Length = 257

 Score = 94.3 bits (224), Expect = 5e-20
 Identities = 46/85 (54%), Positives = 56/85 (65%)
 Frame = +1

Query: 1   VLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCY 180
           VL NFH M +T DKL  +VKKW TLIEAN  VKTTDGY LRVF I FT K     +KT Y
Sbjct: 94  VLTNFHAMSMTHDKLCSIVKKWHTLIEANTAVKTTDGYTLRVFVIAFTKKSVNQVKKTSY 153

Query: 181 AQHTQVRAIRKKMCEIITRDVTNSD 255
            + +++R IR +M   I ++VT  D
Sbjct: 154 TKTSKIRKIRSEMIGCIEKEVTGCD 178



 Score = 91.9 bits (218), Expect = 3e-19
 Identities = 42/80 (52%), Positives = 58/80 (72%)
 Frame = +3

Query: 255 LREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELHXXXXXXXX 434
           L+EVV+KLIPDSI KDIEK C  +YPL++V IRKVK++KRP+ ++ +L +LH        
Sbjct: 179 LKEVVSKLIPDSIGKDIEKTCSKLYPLQEVYIRKVKIIKRPKVDLGRLHDLH-GDSITVG 237

Query: 435 XXXDKSERPEGYEPPVQESV 494
              +K +RP+ YEPPVQ+ V
Sbjct: 238 ADGEKVDRPDDYEPPVQQEV 257


>L25599-3|ABN43087.1|  570|Caenorhabditis elegans Hypothetical
           protein F54H12.8 protein.
          Length = 570

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
 Frame = -3

Query: 399 STSRSRNG--ASSTLSPFGCKHRAEGRCHGRPSRCPWQWSQESTCSPPP-*VRVSDVACN 229
           S+S S N   ASST S     +    R   +P+  PWQ  Q S  +PPP  + V D  C 
Sbjct: 94  SSSYSGNSLTASSTTSDPSIPNPTRKRITRQPNYPPWQPHQPSNPNPPPFSMNVPDFHCF 153

Query: 228 DFTHFLSDCSDLSVLGV 178
                 ++     V+GV
Sbjct: 154 IDEKMRAEVEIFHVIGV 170


>AC006610-1|AAK85447.4|  360|Caenorhabditis elegans Hypothetical
           protein C30F12.1 protein.
          Length = 360

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -3

Query: 285 QESTCSPPP*VRVSDVACNDFTHFLSDCSDLSVLGVAR 172
           Q  +  PPP   ++ V CNDF    S C D+S   ++R
Sbjct: 61  QVLSTGPPP--GLAPVQCNDFDSCYSSCDDISHPSLSR 96


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,496,331
Number of Sequences: 27780
Number of extensions: 232482
Number of successful extensions: 712
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1049512662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)