Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30990
         (530 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g04840.1 68416.m00525 40S ribosomal protein S3A (RPS3aA) simi...   117   4e-27
At4g34670.1 68417.m04922 40S ribosomal protein S3A (RPS3aB)           116   8e-27
At3g52640.1 68416.m05799 nicastrin-related contains weak similar...    30   0.85 
At1g07000.1 68414.m00745 exocyst subunit EXO70 family protein si...    27   6.0  
At5g38550.1 68418.m04661 jacalin lectin family protein similar t...    27   7.9  
At1g22930.1 68414.m02866 T-complex protein 11 contains Pfam PF05...    27   7.9  

>At3g04840.1 68416.m00525 40S ribosomal protein S3A (RPS3aA) similar
           to 40S ribosomal protein S3A (S phase specific protein
           GBIS289) GB:P49396 [Brassica rapa]
          Length = 262

 Score =  117 bits (282), Expect = 4e-27
 Identities = 51/85 (60%), Positives = 67/85 (78%)
 Frame = +1

Query: 1   VLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCY 180
           VLC F GMD TTDKLR +VKKWQTLIEA++DVKTTD Y LR+FCI FT + +   ++TCY
Sbjct: 96  VLCQFWGMDFTTDKLRSLVKKWQTLIEAHVDVKTTDSYTLRLFCIAFTKRRANQVKRTCY 155

Query: 181 AQHTQVRAIRKKMCEIITRDVTNSD 255
           AQ +Q+R IR+KM +I+ R+ ++ D
Sbjct: 156 AQSSQIRQIRRKMRDIMVREASSCD 180



 Score = 70.5 bits (165), Expect = 6e-13
 Identities = 29/52 (55%), Positives = 44/52 (84%)
 Frame = +3

Query: 255 LREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELH 410
           L+++V K IP++I ++IEKA  GIYPL++V IRKVK+LK P+F++ KLM++H
Sbjct: 181 LKDLVAKFIPEAIGREIEKATQGIYPLQNVFIRKVKILKAPKFDLGKLMDVH 232


>At4g34670.1 68417.m04922 40S ribosomal protein S3A (RPS3aB)
          Length = 262

 Score =  116 bits (280), Expect = 8e-27
 Identities = 51/85 (60%), Positives = 67/85 (78%)
 Frame = +1

Query: 1   VLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCY 180
           VL  F GMD TTDKLR +VKKWQTLIEA++DVKTTDGY LR+FCI FT + +   ++TCY
Sbjct: 96  VLTQFWGMDFTTDKLRSLVKKWQTLIEAHVDVKTTDGYTLRMFCIAFTKRRANQVKRTCY 155

Query: 181 AQHTQVRAIRKKMCEIITRDVTNSD 255
           AQ +Q+R IR+KM EI+ ++ ++ D
Sbjct: 156 AQSSQIRQIRRKMSEIMVKEASSCD 180



 Score = 72.9 bits (171), Expect = 1e-13
 Identities = 31/52 (59%), Positives = 44/52 (84%)
 Frame = +3

Query: 255 LREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELH 410
           L+E+V K IP++I ++IEKA  GIYPL++V IRKVK+LK P+F++ KLME+H
Sbjct: 181 LKELVAKFIPEAIGREIEKATQGIYPLQNVFIRKVKILKAPKFDLGKLMEVH 232


>At3g52640.1 68416.m05799 nicastrin-related contains weak similarity
           to Nicastrin precursor (Swiss-Prot:Q92542) [Homo
           sapiens]
          Length = 676

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
 Frame = -3

Query: 231 NDFTH-FLSDCSDLSVLGVARLA--LAQGVLIGETNAEDT*NVSIGCLHINVGFDESL 67
           N F H  L D S+++   V   A  +A+ + I  ++ +DT N ++G +H+N  F E L
Sbjct: 430 NKFYHSHLDDLSNINSSSVVAAASVVARTLYILASDNKDTSNSALGSIHVNASFVEEL 487


>At1g07000.1 68414.m00745 exocyst subunit EXO70 family protein
           similar to leucine zipper protein GI:10177020 from
           [Arabidopsis thaliana] contains Pfam domain PF03081:
           Exo70 exocyst complex subunit;
          Length = 599

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 20/76 (26%), Positives = 34/76 (44%)
 Frame = +2

Query: 167 ARRATPSTLRSEQSERKCVKSLHATSLTLTQGGGEQVDS*LHCQGHREGLPWHLPSARCL 346
           AR  T   +  E  +   +  L+A ++ +  GG  +  S ++    RE L   L      
Sbjct: 168 ARPITDYKIVIEALQSSVIGDLNAIAVRMVAGGFAKECSRVYSSRRREFLEESLSRLHLR 227

Query: 347 HPKGESVEEAPFRDLE 394
               E V+E+P++DLE
Sbjct: 228 GLSMEEVQESPWQDLE 243


>At5g38550.1 68418.m04661 jacalin lectin family protein similar to
           myrosinase-binding protein homolog [Arabidopsis
           thaliana] GI:2997767; contains Pfam profile PF01419
           jacalin-like lectin domain
          Length = 594

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +2

Query: 287 LHCQGHREGLPW 322
           L CQG R+GLPW
Sbjct: 299 LECQGDRKGLPW 310


>At1g22930.1 68414.m02866 T-complex protein 11 contains Pfam
           PF05794: T-complex protein 11
          Length = 1131

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 15/43 (34%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
 Frame = +2

Query: 134 LVSPIRTP*ANARRATPSTLRSEQSER-KCVKSLHATSLTLTQ 259
           L+  + TP    R+ATPSTLRS + ++   V+++  TS+ +++
Sbjct: 368 LLKRVATP---RRKATPSTLRSRKGKKVSSVRNVAGTSVKMSR 407


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,992,928
Number of Sequences: 28952
Number of extensions: 219061
Number of successful extensions: 626
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 987020800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)