Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30989
         (370 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub...    31   0.043
SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyc...    29   0.23 
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    28   0.53 
SPBC28F2.02 |mep33||mRNA export protein Mep33|Schizosaccharomyce...    28   0.53 
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom...    28   0.53 
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ...    27   0.70 
SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   0.70 
SPCC622.17 |apn1||AP endonuclease Apn1|Schizosaccharomyces pombe...    27   1.2  
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po...    26   1.6  
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   2.8  
SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalyt...    25   3.7  
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar...    25   3.7  
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    24   6.5  
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro...    24   6.5  
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom...    24   6.5  
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S...    24   8.6  
SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomy...    24   8.6  
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    24   8.6  

>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
           subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 31.5 bits (68), Expect = 0.043
 Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
 Frame = +3

Query: 99  KEAKLREIEAKEKVIRDA---KLKEEKERASALEIKALEEMASGTAKK*KD 242
           KE KL++  A+E+ IR     +LK EKER    + K L E     AKK K+
Sbjct: 76  KEKKLQKQRAQEERIRQKEAERLKREKERQQREQEKKLREQEKIAAKKMKE 126


>SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 442

 Score = 29.1 bits (62), Expect = 0.23
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +3

Query: 81  QNRLSKKEAKL-REIEAKEKVIRDAKLKEEKERASALEIKALEEMASGTAKK*KDK 245
           Q + +K   K  RE  A+E      K KEE+ER +A E  A    A+   K  +DK
Sbjct: 291 QEKAAKAARKWEREAGAREAAAAAQKKKEEEERRAAEEAAAKASAAAANKKAKEDK 346


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 27.9 bits (59), Expect = 0.53
 Identities = 16/62 (25%), Positives = 33/62 (53%)
 Frame = +3

Query: 81  QNRLSKKEAKLREIEAKEKVIRDAKLKEEKERASALEIKALEEMASGTAKK*KDKIVIVN 260
           Q    KK  K ++   +EK+ R+ +L+EE+E+    E K  E++     ++ + +++   
Sbjct: 668 QKEREKKLKKQQQEADREKMAREQRLREEEEKRILEERKRREKLDKEEEERRRRELLEKE 727

Query: 261 SE 266
           SE
Sbjct: 728 SE 729


>SPBC28F2.02 |mep33||mRNA export protein Mep33|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 292

 Score = 27.9 bits (59), Expect = 0.53
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = +3

Query: 66  YGAFHQNRLSKKEAKLREIE--AKEKVIRDAKLKEEKERASALEIKALE 206
           +G  ++NR +K +AK+R+IE  A     +DAK +E   +    E +A E
Sbjct: 30  FGLKNKNRSTKVQAKIRQIEQNAAASGSKDAKRQEALRKRREEEKRAAE 78


>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 569

 Score = 27.9 bits (59), Expect = 0.53
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = +3

Query: 63  LYGAFHQNRLSKKEAKLREIEAKEKVIRDAKLKEEKERASALEIKALEEMASGTAK 230
           L  A+++    KK+        KE V+     +  K+ A  LE  + E+M S  AK
Sbjct: 305 LESAYNEELEMKKDTSKPTASTKEVVVEKKPDESRKQAARTLETVSEEQMGSSNAK 360


>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 27.5 bits (58), Expect = 0.70
 Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +3

Query: 75  FHQNRLSKKEAKLREIEAKEKVIRDAKLKEEKERASALEI-KALEE 209
           +H  R S+K+A L + +     + +  ++  K+R  +LE+ KAL++
Sbjct: 446 YHMKRRSRKDAPLLKSQLLMDSLENLPVRASKDRVRSLEVAKALQD 491


>SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 642

 Score = 27.5 bits (58), Expect = 0.70
 Identities = 13/50 (26%), Positives = 29/50 (58%)
 Frame = +3

Query: 81  QNRLSKKEAKLREIEAKEKVIRDAKLKEEKERASALEIKALEEMASGTAK 230
           Q+ L +++  LRE    E+ ++ A+   ++  + ALE++A  + A+  A+
Sbjct: 106 QDLLEQRQVALREAREAEEELQRARQYNDRSTSEALELEARAKKAAQDAE 155


>SPCC622.17 |apn1||AP endonuclease Apn1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 342

 Score = 26.6 bits (56), Expect = 1.2
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +3

Query: 78  HQNRLSKKEAKLREIEAKEKVIRDAKLKEEKERASALEIKALEE 209
           H N+  KKEAK    +  +   +   L  +K++    E+K+L+E
Sbjct: 299 HLNKFEKKEAKKDRKKKSKDGDQTTLLLRKKQKLGNAEVKSLDE 342


>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 26.2 bits (55), Expect = 1.6
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +3

Query: 81  QNRLSKKEAKLREIEAKEKVIRDAKLKEEKERASALE 191
           ++  +KKE K R+ EAK++     + KE+KE+    E
Sbjct: 438 EDEAAKKEEKRRKKEAKKEKKEKKEKKEKKEKKKKSE 474


>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 395

 Score = 25.4 bits (53), Expect = 2.8
 Identities = 17/62 (27%), Positives = 31/62 (50%)
 Frame = +3

Query: 78  HQNRLSKKEAKLREIEAKEKVIRDAKLKEEKERASALEIKALEEMASGTAKK*KDKIVIV 257
           H+  L+++  KL E  A E      K  EE+E+++  + K      S TA +  ++  ++
Sbjct: 250 HEKSLNERATKLSE--ANENFNNRFKEFEEREKSAIKQNKEQSSEGSKTANQTHEQKELI 307

Query: 258 NS 263
           NS
Sbjct: 308 NS 309


>SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalytic
           subunit Pka1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 80  PEQAIKERSETTRD*SQREGHPRCQAEGGERKS 178
           PE A +  S+++     R+G     +E GER+S
Sbjct: 127 PESASRSSSQSSHQRHSRDGRGELGSEHGERRS 159


>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 988

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 162 EEKERASALEIKALEEMASGTAK 230
           EEK++AS L  + L +  SGT K
Sbjct: 191 EEKQQASGLNFRGLAKPISGTLK 213


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1639

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 22/66 (33%), Positives = 30/66 (45%)
 Frame = +3

Query: 111 LREIEAKEKVIRDAKLKEEKERASALEIKALEEMASGTAKK*KDKIVIVNSEICRYFFPH 290
           +R I+   KV  D KL E K++   +EI A     +G   + K           R F  H
Sbjct: 334 IRSIKNSWKVFHDEKLNELKKQ---VEISASAAQLNGLYPQKK-----------RAFVSH 379

Query: 291 FNQNRK 308
           F+QNRK
Sbjct: 380 FSQNRK 385


>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 240

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +3

Query: 75  FHQNRLSKKEAKLREIEAKEKVIRD-AKLKEEKERASALEIK 197
           F +     K+    E++   + +R+ AK K+EKER  ALE K
Sbjct: 30  FEETEEEIKKRSPEELKQAIEALREKAKEKKEKERILALEEK 71


>SPBC713.04c |||U3 snoRNP-associated protein
           Utp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 854

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +3

Query: 288 HFNQNRKLRCYQF 326
           +FNQN KLRC  F
Sbjct: 250 YFNQNSKLRCAAF 262


>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 362

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 123 EAKEKVIRDAKLKEEKERASALEI 194
           E  EK  +D   KEEKE+ +A+++
Sbjct: 198 EVAEKHSKDKLKKEEKEKKTAVDV 221


>SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = -3

Query: 326 KLITTEFAILIEMWKKISADFTINYNY 246
           +++TT++  L + W  IS + T  ++Y
Sbjct: 315 RVLTTDYNNLKKQWASISPNITYKHSY 341


>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 462

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +3

Query: 111 LREIEAKEKVIRDAKLKEEKERASALEIKALEE 209
           L+ +++K   ++  KLKEEK +      K+ EE
Sbjct: 296 LKSLQSKSSPVKLLKLKEEKAKIKNQLFKSEEE 328


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,185,754
Number of Sequences: 5004
Number of extensions: 17413
Number of successful extensions: 105
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)