Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30987
         (793 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          25   0.61 
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    23   4.3  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    23   4.3  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    22   7.5  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    22   7.5  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 25.4 bits (53), Expect = 0.61
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 350 KSLISKLCFKSKSLVVVNKCFNQIKFLIVF 439
           K L+S  C     ++  + CFN +KF+I F
Sbjct: 63  KLLLSNPCKHPTIIMPQDVCFNDLKFIIEF 92


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 243 NNNHNHSKICGNIIDI 290
           NNN+N  K+  NII+I
Sbjct: 315 NNNYNSKKLYYNIINI 330


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 243 NNNHNHSKICGNIIDI 290
           NNN+N  K+  NII+I
Sbjct: 326 NNNYNSKKLYYNIINI 341


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 264 KICGNIIDIGVVHLNLLANDIL 329
           +I  NII   V  LN+ AN+IL
Sbjct: 46  EITYNIISAAVNRLNIPANEIL 67


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 264 KICGNIIDIGVVHLNLLANDIL 329
           +I  NII   V  LN+ AN+IL
Sbjct: 46  EITYNIISAAVNRLNIPANEIL 67


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,127
Number of Sequences: 438
Number of extensions: 3201
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)