Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30983
         (785 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po...   116   3e-27
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    27   3.0  
SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|...    27   4.0  
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar...    26   5.3  
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ...    25   9.3  

>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 619

 Score =  116 bits (280), Expect = 3e-27
 Identities = 52/86 (60%), Positives = 71/86 (82%)
 Frame = +1

Query: 1   VTAATLGIVQVFWGLDKKLAHGEHFPSINWLISYSKYMRALDDFYEKNYPEFVPLRTKVK 180
           VT+ATLGIVQVFWGLDKKLA  +HFPSIN  +SYSKY+ AL  +YE+  P F  LR ++K
Sbjct: 429 VTSATLGIVQVFWGLDKKLAQRKHFPSINTSLSYSKYINALQPWYEERVPGFNTLRDQIK 488

Query: 181 EILQEEEDLSEIVQLVGKASLAETER 258
           +I+Q+E+ + EI+QLVGK++L+ET++
Sbjct: 489 QIIQQEDSMLEIIQLVGKSALSETDK 514



 Score = 91.1 bits (216), Expect = 2e-19
 Identities = 38/84 (45%), Positives = 61/84 (72%)
 Frame = +3

Query: 255 KITLEVAKLLKDDFLQQNSYSSYDRFCPFYKTVGMLKNIITFYDMSRHAVESTAQSDNKV 434
           K+TL++A ++K+DFLQQN YS YDR CP YKT  M++N+I +Y  ++ AVE+       V
Sbjct: 514 KVTLDIAGIIKNDFLQQNGYSDYDRCCPLYKTYHMMRNMIAYYTKAKSAVET-----GSV 568

Query: 435 TWNVIRDAMGNVLYQLSSMKFKDP 506
            W+ I+++  ++ Y+L+SMKF++P
Sbjct: 569 PWSKIKESTSDIFYELTSMKFENP 592


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1184

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 20/69 (28%), Positives = 28/69 (40%)
 Frame = +2

Query: 269 GRQAAQRRLPATEQLFVVRSLLPVLQDGGHAEEHHHVLRHVAARGGVHGAVRQQGHVERH 448
           G  A +R  PAT +   V+        G H  + H    +VAA+ G +   R+Q   E H
Sbjct: 18  GLHAMERYKPATSESLYVKG-----HYGPHPHKEHPAA-YVAAKTGFNATSRRQSVREHH 71

Query: 449 PRRHGQRAL 475
               G   L
Sbjct: 72  SSHEGSAQL 80


>SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 863

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +1

Query: 91  LISYSKYMRALDDFYEKNYPEFVPLRTKVKEILQEEEDLSEIVQLVGKASLA 246
           L++    M +L++ +E   P FVP  +      QE +  S  V LVG  + A
Sbjct: 620 LLAIGAMMNSLEEQFEVYVPSFVPFLSSALSNEQEYQLCSVAVGLVGDLARA 671


>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 988

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -1

Query: 386 VVERDDVLQHAHRLVERAEAIV 321
           +V+ DD LQ A++ VER E+++
Sbjct: 1   MVQLDDALQDAYKKVEREESLI 22


>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
           factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 12/40 (30%), Positives = 25/40 (62%)
 Frame = +1

Query: 136 EKNYPEFVPLRTKVKEILQEEEDLSEIVQLVGKASLAETE 255
           +KN  + + LRT+V ++L    +  + ++L  KASL++ +
Sbjct: 189 DKNSAKGIDLRTRVIQLLAIAPETEDFLRLRTKASLSKLQ 228


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,508,021
Number of Sequences: 5004
Number of extensions: 47457
Number of successful extensions: 140
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)