Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30983
(785 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1014 - 26902971-26903085,26903182-26903270,26904302-269043... 130 9e-31
02_01_0561 + 4120268-4120339,4121462-4121588,4121715-4121770,412... 124 6e-29
01_01_0800 - 6221306-6223016,6223418-6223443,6223653-6223664 29 3.2
01_06_0489 + 29754298-29754549,29754639-29754772,29755667-297557... 29 4.2
11_04_0037 - 12642141-12642239,12643352-12643618,12643682-126437... 29 5.5
02_02_0586 - 11861509-11861637,11863651-11863815,11864738-118648... 29 5.5
01_03_0009 + 11601394-11601666,11602486-11602683,11602809-116030... 29 5.5
03_03_0248 + 15819264-15819460,15820691-15820729,15820797-158209... 26 6.3
12_01_0026 + 219663-220843,222201-222447,222574-224535 28 7.3
11_02_0053 - 7797580-7798731 28 7.3
11_01_0026 + 193383-194566,195726-195972,196099-198063 28 7.3
07_03_0614 - 19974200-19975426 28 7.3
07_03_0333 - 16888606-16888740,16889463-16889570,16889691-168897... 28 7.3
06_01_0313 - 2250312-2250516,2250585-2250610,2250792-2251076,225... 28 7.3
10_08_0523 - 18518158-18518442,18518786-18518899,18518994-185192... 28 9.7
06_03_0541 - 21944696-21944851,21944939-21945142,21945438-219474... 28 9.7
06_03_0501 + 21476715-21476785,21477045-21477786,21478097-214782... 28 9.7
>06_03_1014 -
26902971-26903085,26903182-26903270,26904302-26904380,
26904488-26904585,26904848-26904952,26905031-26905117,
26905218-26905412,26905890-26905996,26906559-26906754,
26906865-26906966,26907100-26907171,26907404-26907505,
26907638-26907675,26907769-26907880,26907972-26908028,
26908122-26908177,26908283-26908409,26908856-26908910,
26908919-26909049
Length = 640
Score = 130 bits (315), Expect = 9e-31
Identities = 58/86 (67%), Positives = 74/86 (86%)
Frame = +1
Query: 1 VTAATLGIVQVFWGLDKKLAHGEHFPSINWLISYSKYMRALDDFYEKNYPEFVPLRTKVK 180
VT+ATL IVQVFWGLDKKLA +HFPS+NWLISYSKY +AL+ FYEK +F+ +RTK +
Sbjct: 441 VTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSKALESFYEKFDQDFIDIRTKAR 500
Query: 181 EILQEEEDLSEIVQLVGKASLAETER 258
E+LQ E+DL+EIVQLVGK +LAE+++
Sbjct: 501 EVLQREDDLNEIVQLVGKDALAESDK 526
Score = 102 bits (245), Expect = 3e-22
Identities = 45/87 (51%), Positives = 67/87 (77%), Gaps = 1/87 (1%)
Frame = +3
Query: 255 KITLEVAKLLKDDFLQQNSYSSYDRFCPFYKTVGMLKNIITFYDMSRHAVESTAQSD-NK 431
KITLE AKLL++D+L QN+++ YD+FCPFYK+V M++NII F ++ AVE A +D K
Sbjct: 526 KITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFNTLANQAVERAANADGQK 585
Query: 432 VTWNVIRDAMGNVLYQLSSMKFKDPVK 512
+T++VI+ MG++ Y+L S KF+DP +
Sbjct: 586 ITYSVIKHRMGDLFYRLVSQKFEDPAE 612
Score = 30.7 bits (66), Expect = 1.4
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +2
Query: 512 DGEPKIKADFDQLLEDMSAAFRNLED 589
+GE + A F +L +D++ FRNLED
Sbjct: 612 EGEDVLVAKFQKLYDDLTTGFRNLED 637
>02_01_0561 +
4120268-4120339,4121462-4121588,4121715-4121770,
4121841-4121912,4122017-4122128,4122247-4122284,
4122412-4122513,4122619-4122675,4122755-4122826,
4122992-4123093,4123210-4123405,4123988-4124094,
4124497-4124691,4124771-4124857,4124905-4124913,
4125599-4125703,4126067-4126164,4126250-4126328,
4126912-4127000,4127086-4127200
Length = 629
Score = 124 bits (300), Expect = 6e-29
Identities = 57/89 (64%), Positives = 74/89 (83%), Gaps = 3/89 (3%)
Frame = +1
Query: 1 VTAATLGIVQVFWGLDKKLAHGEHFPSINWLISYSKYMR---ALDDFYEKNYPEFVPLRT 171
VT+ATL IVQVFWGLDKKLA +HFPS+NWLISYSKY + AL+ YE+ P+F+ +RT
Sbjct: 427 VTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSKIPTALEPHYEREDPDFIDIRT 486
Query: 172 KVKEILQEEEDLSEIVQLVGKASLAETER 258
K +E+LQ E+DL+EIVQLVGK +LAE+++
Sbjct: 487 KAREVLQREDDLNEIVQLVGKDALAESDK 515
Score = 100 bits (239), Expect = 1e-21
Identities = 44/87 (50%), Positives = 67/87 (77%), Gaps = 1/87 (1%)
Frame = +3
Query: 255 KITLEVAKLLKDDFLQQNSYSSYDRFCPFYKTVGMLKNIITFYDMSRHAVESTAQSD-NK 431
KITLE AKLL++D+L QN+++ YD++CPFYK+V M++NII F ++ AVE A +D K
Sbjct: 515 KITLETAKLLREDYLAQNAFTPYDKYCPFYKSVWMMRNIIHFNTLATQAVERAAGADGQK 574
Query: 432 VTWNVIRDAMGNVLYQLSSMKFKDPVK 512
+T++VI+ MG++ Y+L S KF+DP +
Sbjct: 575 ITYSVIKHRMGDLFYRLVSQKFEDPAE 601
Score = 30.3 bits (65), Expect = 1.8
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +2
Query: 512 DGEPKIKADFDQLLEDMSAAFRNLED 589
+G+ + A F +L +D++A FRNLED
Sbjct: 601 EGKEVLIAKFQKLYDDLTAGFRNLED 626
>01_01_0800 - 6221306-6223016,6223418-6223443,6223653-6223664
Length = 582
Score = 29.5 bits (63), Expect = 3.2
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +2
Query: 368 HHHVLRHVAARGGV--HGAVRQQGHVERHPRRHGQRALPALLHEVQGPSKDGEP 523
HHH + H GGV G+ Q+ E+ ++H L LH QG +D EP
Sbjct: 44 HHHRVTHGGDGGGVGGGGSGGQEEADEQQQQQHDHHRL-LQLHHHQGVQQDQEP 96
>01_06_0489 +
29754298-29754549,29754639-29754772,29755667-29755721,
29755888-29756007,29756048-29756140,29756360-29756474,
29756728-29757077,29757264-29757332,29757902-29758509,
29758577-29758646
Length = 621
Score = 29.1 bits (62), Expect = 4.2
Identities = 17/47 (36%), Positives = 27/47 (57%)
Frame = -1
Query: 458 GVADDVPRDLVVGLRRGLHRVPRHVVERDDVLQHAHRLVERAEAIVR 318
G+ D+ R+LVVGL + ++ V ++D+LQ RL A +I R
Sbjct: 463 GLISDI-RNLVVGLSSRRGQRAKNKVLQEDILQEIERLAAEAYSIFR 508
>11_04_0037 -
12642141-12642239,12643352-12643618,12643682-12643750,
12643919-12644116,12644262-12644267
Length = 212
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +2
Query: 347 DGGHAEEHHHVLRHVAARGGVHGAVRQQGHVER 445
D + H V+ +A GG HGA R+QG R
Sbjct: 108 DEKQRQRQHKVVVGLAVAGGEHGAARKQGKQSR 140
>02_02_0586 -
11861509-11861637,11863651-11863815,11864738-11864846,
11864971-11865065,11865169-11865702,11866299-11866499,
11867826-11868090,11868111-11868736
Length = 707
Score = 28.7 bits (61), Expect = 5.5
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +2
Query: 392 AARGGVHGAVRQQGHVERHPRRHGQRALPALLH-EVQGPSKDGEPKIKADFDQLLEDMSA 568
AA +R QG + R G+RA A + E+Q +DG + D Q +++ SA
Sbjct: 45 AAPAAARLLLRPQGQQQDAARGSGRRAATAAVERELQTDQRDGGNDRQTDHHQAMDESSA 104
Query: 569 A 571
A
Sbjct: 105 A 105
>01_03_0009 +
11601394-11601666,11602486-11602683,11602809-11603081,
11603493-11603595,11603666-11603784,11604038-11604214,
11604443-11605192
Length = 630
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = -2
Query: 595 CLVLEVAESGRHIF*KLVEIGLDLRFTVFTGSLN 494
C+ E+AESG+H F + + G DL TV T S++
Sbjct: 285 CMTWELAESGKH-FVRTIVNGADLVPTVSTSSID 317
>03_03_0248 +
15819264-15819460,15820691-15820729,15820797-15820936,
15821150-15821225,15822866-15823160,15823236-15823342,
15823442-15823489,15823568-15823853,15823954-15823961,
15824083-15824184,15824426-15824553,15824664-15824741,
15825047-15825145,15825247-15825302
Length = 552
Score = 25.8 bits (54), Expect(2) = 6.3
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +1
Query: 166 RTKVKEILQEEEDLSEIVQLVGKASLAETERSRSRSPS 279
R KV +I +E E E + VG+ S + R + RSPS
Sbjct: 257 RRKVSQIERERE--REAARSVGRVSYRDPYREQRRSPS 292
Score = 21.0 bits (42), Expect(2) = 6.3
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = +1
Query: 256 RSRSRSPSCSK 288
RSRSRSPS S+
Sbjct: 305 RSRSRSPSYSR 315
>12_01_0026 + 219663-220843,222201-222447,222574-224535
Length = 1129
Score = 28.3 bits (60), Expect = 7.3
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Frame = +2
Query: 446 HPRRHG--QRALPALLHEVQGPSKDGEPKIKADFDQLLEDMSAAFRNL 583
H +G ++++ ALLH V G S + +P DFD+L +DM F N+
Sbjct: 996 HENSYGNTEKSIDALLHSVDG-SINFKP---FDFDKLADDMLQEFSNI 1039
>11_02_0053 - 7797580-7798731
Length = 383
Score = 28.3 bits (60), Expect = 7.3
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = -1
Query: 488 GGELVEHVA--HGVADDVPRDLVVGLRRGLHRVPRHV 384
GG VEHV G+ DDV D + + G HR R V
Sbjct: 14 GGVAVEHVELIPGMPDDVAVDCLARVPHGAHRAMRRV 50
>11_01_0026 + 193383-194566,195726-195972,196099-198063
Length = 1131
Score = 28.3 bits (60), Expect = 7.3
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Frame = +2
Query: 446 HPRRHG--QRALPALLHEVQGPSKDGEPKIKADFDQLLEDMSAAFRNL 583
H +G ++++ ALLH V G S + +P DFD+L +DM F N+
Sbjct: 997 HENSYGNTEKSIDALLHSVDG-SINFKP---FDFDKLADDMLQEFSNI 1040
>07_03_0614 - 19974200-19975426
Length = 408
Score = 28.3 bits (60), Expect = 7.3
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +1
Query: 76 PSINWLISYSKYMRALDDFYEKNYPEFVPLRTKVKEILQEEEDLS 210
P + WL S++ A+DD+YE+ E + ++ E+ E DLS
Sbjct: 127 PMVTWL---SRWAEAVDDYYEEALLEIDDHQRRMGELETELTDLS 168
>07_03_0333 -
16888606-16888740,16889463-16889570,16889691-16889790,
16890473-16890560,16890637-16893253
Length = 1015
Score = 28.3 bits (60), Expect = 7.3
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +2
Query: 272 RQAAQRRLPATEQLFVVRSLLPVLQDGGHAEEHHHVLRHVAARG 403
R A + P T Q + +L L GHA + +LRH+ ARG
Sbjct: 140 RMAREGAPPPTNQAYA--ALADALAKAGHARDSLLLLRHMRARG 181
>06_01_0313 -
2250312-2250516,2250585-2250610,2250792-2251076,
2251289-2251567,2251817-2252121,2252581-2252860,
2253209-2253475
Length = 548
Score = 28.3 bits (60), Expect = 7.3
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = +3
Query: 366 NIITFYDMSRHAVESTAQSDNKVTWNVIRDAMGNVLYQLSSMKFKDPVK 512
N++ + SRH + A S +K++ N + A+ V KF++ K
Sbjct: 41 NMVVILNDSRHTLLPKADSQSKMSINALSSALSKVQSSKGFRKFREAAK 89
>10_08_0523 -
18518158-18518442,18518786-18518899,18518994-18519219,
18519364-18519470,18519809-18519964,18520100-18520210
Length = 332
Score = 27.9 bits (59), Expect = 9.7
Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Frame = +2
Query: 395 ARGGVHGAVRQQGHVERHPRRHGQRALPALLHEVQGPSKDGE-PKIKADFDQLLEDMSAA 571
A+ HGA + GH P + PA GP+ D + ++K D L ++
Sbjct: 162 AQASSHGAKKANGHAPNAPPSRSAKPSPA---NSAGPAYDEQITELKLLVDSLEKERDFY 218
Query: 572 FRNLED*TLYC 604
F L D + C
Sbjct: 219 FSKLRDVEILC 229
>06_03_0541 - 21944696-21944851,21944939-21945142,21945438-21947472,
21947644-21947720,21948289-21948477,21949188-21949448,
21949527-21949632,21951330-21951517,21951814-21951971,
21952015-21952840,21952947-21953210
Length = 1487
Score = 27.9 bits (59), Expect = 9.7
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = +1
Query: 70 HFPSINWLISYSKYMRALDDFYEKNYPEFVPLRTKVKEILQEEEDLSEIV 219
HF S WL+ K+ D+F N VP + E +QEE +L+E V
Sbjct: 1102 HFRS-RWLVIKKKHS---DEFTRNNNGTNVPKIPETLETIQEETELAEAV 1147
>06_03_0501 +
21476715-21476785,21477045-21477786,21478097-21478246,
21478350-21478589,21479968-21480048,21480144-21480185,
21480953-21481033,21481271-21481368,21482574-21482667,
21482733-21482861,21483881-21483931,21484023-21484049,
21484280-21484387,21484956-21485201
Length = 719
Score = 27.9 bits (59), Expect = 9.7
Identities = 17/58 (29%), Positives = 21/58 (36%)
Frame = +2
Query: 323 RSLLPVLQDGGHAEEHHHVLRHVAARGGVHGAVRQQGHVERHPRRHGQRALPALLHEV 496
R + ++ HA H H HV G HG H H HG P+ H V
Sbjct: 215 RDAMHIVGIHAHAAAHRHSHAHV--HGACHGGAVNDAHA--HGHGHGHEEGPSARHVV 268
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,626,232
Number of Sequences: 37544
Number of extensions: 319095
Number of successful extensions: 1213
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1207
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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