Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30983
         (785 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20291| Best HMM Match : ATP-synt_ab (HMM E-Value=0)                160   1e-39
SB_58036| Best HMM Match : Cadherin (HMM E-Value=0)                    29   3.2  
SB_43379| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_23739| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_43238| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.9  
SB_25447| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.9  
SB_2876| Best HMM Match : Peptidase_C2 (HMM E-Value=2.8)               28   9.9  

>SB_20291| Best HMM Match : ATP-synt_ab (HMM E-Value=0)
          Length = 475

 Score =  160 bits (389), Expect = 1e-39
 Identities = 75/86 (87%), Positives = 81/86 (94%)
 Frame = +1

Query: 1   VTAATLGIVQVFWGLDKKLAHGEHFPSINWLISYSKYMRALDDFYEKNYPEFVPLRTKVK 180
           VT+ATL IVQVFWGLDKKLA  +HFPSINWLISYSKYMRALDD+YEKNYPEFV LRTKVK
Sbjct: 279 VTSATLNIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRALDDYYEKNYPEFVALRTKVK 338

Query: 181 EILQEEEDLSEIVQLVGKASLAETER 258
           EILQEEEDLSEIVQLVGK SLAE+++
Sbjct: 339 EILQEEEDLSEIVQLVGKGSLAESDK 364



 Score =  153 bits (371), Expect = 2e-37
 Identities = 65/86 (75%), Positives = 79/86 (91%)
 Frame = +3

Query: 255 KITLEVAKLLKDDFLQQNSYSSYDRFCPFYKTVGMLKNIITFYDMSRHAVESTAQSDNKV 434
           KITLEVAKL+KDDFLQQN Y+ YD+FCPFYKTVGML NI+ FYDM+RH+VE+TAQ++NKV
Sbjct: 364 KITLEVAKLIKDDFLQQNGYTPYDKFCPFYKTVGMLSNIVAFYDMARHSVETTAQAENKV 423

Query: 435 TWNVIRDAMGNVLYQLSSMKFKDPVK 512
           TWNVI++ MG+ +Y LSSMKFKDP+K
Sbjct: 424 TWNVIKENMGDAIYALSSMKFKDPIK 449



 Score = 40.3 bits (90), Expect = 0.002
 Identities = 18/29 (62%), Positives = 21/29 (72%)
 Frame = +2

Query: 503 PSKDGEPKIKADFDQLLEDMSAAFRNLED 589
           P KDGE KIKADF +L E +   FR+LED
Sbjct: 447 PIKDGEAKIKADFAELHEQLQQGFRSLED 475


>SB_58036| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 6074

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 115  RALDDFYEKNYPEFVPLRTKVKEILQEEEDLS 210
            R L++FY  + PE +PL T +  +   E+D+S
Sbjct: 2392 RFLNEFYNASIPENLPLGTSIVRVRAVEDDVS 2423


>SB_43379| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3066

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
 Frame = +1

Query: 43   LDKKLAHGEHFPSINWLISYSKYMRALDDFYEKNYPEFVPLRTKVKEILQEEEDLSEIV- 219
            LDKK +      S+   + Y +  +    FYE     +V L ++++ + +    +  I+ 
Sbjct: 2797 LDKKCSAEVFVESLLMRLDYFRAAQTCIRFYESGATSYVELHSRLEHLNKACRHIEAIIA 2856

Query: 220  QLVGKASLAETERSRSRSPSCSK 288
            +       A T  SR RSPS SK
Sbjct: 2857 EKRSPRGSALTGSSRLRSPSGSK 2879


>SB_23739| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 76

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = +1

Query: 115 RALDDFYEKNYPEF---VPLRTKVKEILQEEEDLSEIVQLVGKASLAETERSR 264
           + +  FYEK YP F    P R+ V+   +  ED  +IV  V K+ +AE    R
Sbjct: 9   KTISGFYEKRYPIFKNVSPSRSSVRRQYRSSED--KIVLPVFKSFIAEINTRR 59


>SB_43238| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2532

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
 Frame = +3

Query: 288  DDFLQQNSYSSYDRFCP--FYKT-VGMLKNIITFYDMSRHAVESTAQSDN 428
            DD L +NS   Y  FCP   Y T V ++K++I    +S   ++S +  DN
Sbjct: 864  DDLLSRNSSIRYFVFCPNNKYTTWVTLVKSLIDNSTLSTFHIQSPSIDDN 913


>SB_25447| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 752

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +2

Query: 311 LFVVRSLLPVLQDGGHAEEHHHVLRHVAARGGVHGAVRQQGHVERHPR 454
           +F   ++LP   +GG   E   ++R V+ +GGV    R+   V   PR
Sbjct: 109 IFAAIAMLPTGSEGGWFGEE--IVRAVSEKGGVRERPRESERVRESPR 154


>SB_2876| Best HMM Match : Peptidase_C2 (HMM E-Value=2.8)
          Length = 947

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = -1

Query: 425 VGLRRGLHRVPRHVVERDDVLQHAHR 348
           + LRR L R+PR  V R+D L H HR
Sbjct: 598 IALRRMLRRIPREDVLRND-LAHDHR 622


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,124,558
Number of Sequences: 59808
Number of extensions: 355757
Number of successful extensions: 1219
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1219
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2155861620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)