Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30980
         (792 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha sub...   126   3e-30
SPAC23H3.09c |gly1||threonine aldolase |Schizosaccharomyces pomb...    27   2.3  
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy...    27   3.1  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   3.1  
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma...    27   3.1  
SPAC1039.07c |||4-aminobutyrate aminotransferase |Schizosaccharo...    27   4.1  
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom...    26   5.4  
SPCC4B3.06c |||NADPH-dependent FMN reductase |Schizosaccharomyce...    26   5.4  
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po...    26   5.4  
SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase |Schizosaccha...    26   5.4  
SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo...    25   9.4  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   9.4  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    25   9.4  
SPAC13G6.05c |||TRAPP complex subunit Bet3 |Schizosaccharomyces ...    25   9.4  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    25   9.4  

>SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha
           subunit Pda1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score =  126 bits (305), Expect = 3e-30
 Identities = 54/85 (63%), Positives = 67/85 (78%)
 Frame = +1

Query: 508 AYLMGVSVLGVLSELTGRRTGCSRGKGGSMHLYGRNFYGGNGIVGAQVPLGAGVAFAHKY 687
           AY  G+S+  ++ EL GR+ G S+GKGGSMH++ +NFYGGNGIVGAQ+PLGAG+ FA KY
Sbjct: 141 AYTRGLSIRSIIGELMGRQCGASKGKGGSMHIFAKNFYGGNGIVGAQIPLGAGIGFAQKY 200

Query: 688 RADGGVTFALYGDGAANQGQLFEAY 762
                 TFALYGDGA+NQGQ FEA+
Sbjct: 201 LEKPTTTFALYGDGASNQGQAFEAF 225



 Score = 86.6 bits (205), Expect = 4e-18
 Identities = 43/97 (44%), Positives = 64/97 (65%), Gaps = 2/97 (2%)
 Frame = +2

Query: 224 QHEKRGDIR--NQPYKLHKLDQGPATSATLTSEDALKLYEQLTILRRIETASGNLYKEKI 397
           +H+K   ++  +  ++ +K+D  P+T   +T  + L LYE++  +RR+E A   LYK K 
Sbjct: 45  EHDKPFPVKLDDSVFEGYKIDV-PSTEIEVTKGELLGLYEKMVTIRRLELACDALYKAKK 103

Query: 398 IRGFCHLYSGQEAVAVGMRAAMRDADSVITAYRCHGW 508
           IRGFCHL  GQEAVA G+  A+   DS+IT+YRCHG+
Sbjct: 104 IRGFCHLSIGQEAVAAGIEGAITLDDSIITSYRCHGF 140


>SPAC23H3.09c |gly1||threonine aldolase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 376

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -1

Query: 405 PRMIFSLYRFPDAVSILRNIV 343
           PR++F +   PDAV IL+N++
Sbjct: 332 PRIVFHIQITPDAVEILKNVL 352


>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1019

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 16/64 (25%), Positives = 31/64 (48%)
 Frame = +2

Query: 191 DCTGCSDKRKIQHEKRGDIRNQPYKLHKLDQGPATSATLTSEDALKLYEQLTILRRIETA 370
           D    ++KR+++H+K+   R Q   L +  QG   S+ +  +  +K +E      ++  A
Sbjct: 476 DLDDSAEKRRVEHQKQLASRKQAEGLQRFAQGSVPSSGI-EKPTVKRFESYKRDSQLPQA 534

Query: 371 SGNL 382
            G L
Sbjct: 535 IGEL 538


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +2

Query: 662  PEWPSPTSTAPTGESRSLCTETEPPIRVNSSK 757
            P  P PTST P  +S S      PP+   SS+
Sbjct: 1041 PPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSE 1072



 Score = 26.2 bits (55), Expect = 5.4
 Identities = 17/49 (34%), Positives = 21/49 (42%)
 Frame = -2

Query: 665  PAPNGTCAPTIPLPP*KLRPYKCMEPPLPREQPVLRPVSSESTPSTLTP 519
            P P  + AP +P P   L P   +  P  +  PV  P  S   PS  TP
Sbjct: 1209 PVPPPSTAPPVPTPSAGLPP---VPVPTAKAPPV--PAPSSEAPSVSTP 1252


>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 963

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +1

Query: 673 FAHKYRADGGVTFALYGDGAANQGQLFEAYT 765
           F    R D    F +YG G AN  Q++ AYT
Sbjct: 855 FVKFIRLDENSMFHIYGTGFANDVQIWMAYT 885


>SPAC1039.07c |||4-aminobutyrate aminotransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 448

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 5/52 (9%)
 Frame = +2

Query: 455 AAMRDADSVITAYRCHGWLISWALVCWGCSR-----S*RGAGPVAPGAREVP 595
           AA+R A      Y C  +  SW  V  G +      + RG GP  PG+  +P
Sbjct: 124 AALRMAKVYTNKYECVAFSSSWHGVTGGAASLTFAAARRGYGPALPGSYTIP 175


>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 633

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = -2

Query: 689 RYLWAKAT--PAPNGTCAPTIPLPP*KLRPYKCMEPPLPREQPVLRPVSSEST 537
           R LW ++T   APN      +P P  K +    ++P  P  +P L  + S +T
Sbjct: 574 RKLWPQSTLIQAPNSDDEENVPSPSPKKKVVSPIKPLSPSRRPPLTSLYSGTT 626


>SPCC4B3.06c |||NADPH-dependent FMN reductase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 200

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/59 (22%), Positives = 27/59 (45%)
 Frame = +3

Query: 126 DKMSKLIPSAAKFLAGNTITKVTAPVVATNAKYSTKKEATFEISPTNSINWIRALQHQP 302
           +K+ K+ P     + G+  +K   P +AT      K+E  F+    +  +W  ++  +P
Sbjct: 5   EKLLKITPKILVIM-GSVRSKRLCPTIATWVGEMGKRETNFDYEKVDLTDWPLSMSDEP 62


>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 949

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 596 MEPPLPREQPVLRPVSSESTPSTLTPM 516
           +E P+   +PV  P  +E TP TL+P+
Sbjct: 41  LEDPVNPIRPVYTPTRTEITPVTLSPI 67


>SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 21/82 (25%), Positives = 39/82 (47%)
 Frame = +3

Query: 96  INLGFIEIIIDKMSKLIPSAAKFLAGNTITKVTAPVVATNAKYSTKKEATFEISPTNSIN 275
           I++ F + ++D + K+  + A+F   N   K   PVV+   ++ + K   F+  P     
Sbjct: 355 ISIPFQKDMLDTVVKVFSADARFEINNESQKTGEPVVSVVKRFVSDK--IFK-KPITVNE 411

Query: 276 WIRALQHQPHSLLKMLLSCMNN 341
           W   L +Q + + +M L   NN
Sbjct: 412 W-WDLGNQVYKIRQMFLELWNN 432


>SPAC821.05 |||translation initiation factor
           eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 357

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
 Frame = +2

Query: 266 LHKLDQGPATSATLTSEDALKLYEQ---LT-ILRRIETASGNLYKEKI 397
           LH L + P  ++TLT+E AL+  E    LT      E + G  Y++ I
Sbjct: 204 LHSLSEPPTPASTLTAEAALEDCESNLPLTETFSNFEVSLGTRYRKNI 251


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = -2

Query: 665 PAPNGTCAPTIPLPP*KLRPYKCMEPPLPREQP 567
           P P    A +IPLPP   +      PP PR  P
Sbjct: 341 PPPRSNAAGSIPLPP---QGRSAPPPPPPRSAP 370


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
           pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -2

Query: 407 NHG*SFLYIGFLMRFQSSAISSVVHTA*EHLQ 312
           N+G S L I  LM  +   + +V+HTA +H+Q
Sbjct: 147 NYGLSILSIHALMCVECECLLNVIHTA-QHMQ 177


>SPAC13G6.05c |||TRAPP complex subunit Bet3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 245

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +2

Query: 671 PSPTSTAPTGESRSLCTETEPPIR-VNSSKPT 763
           P+PT T+P   S S  ++T+   R  NS  PT
Sbjct: 166 PNPTQTSPGKPSTSESSQTDTSTRPANSQTPT 197


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
           Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1919

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -2

Query: 407 NHG*SFLYIGFLMRFQSSAISSVVHTA*EHLQ 312
           N+G S L I  LM  +   + +V+HTA +H+Q
Sbjct: 147 NYGLSILSIHALMCVECECLLNVIHTA-QHMQ 177


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,174,726
Number of Sequences: 5004
Number of extensions: 64469
Number of successful extensions: 249
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 249
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)