Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30980
         (792 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    23   2.5  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    23   3.3  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   5.7  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   7.5  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        21   9.9  

>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +1

Query: 394 DHPWFLSPVFRTRSRGSRYESSDAR 468
           +HPWF   V R +     Y   DAR
Sbjct: 128 EHPWFKKSVQRIKPYDEYYVWRDAR 152


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +2

Query: 335 EQLTILRRIETASGNLYKEKIIRGFCHLYSGQEAVAVGMRAA 460
           +++ IL +I    G+L     I G C L+   E++ VGM  A
Sbjct: 281 DRIDILSQINGILGSLVA---ITGGCFLFRAWESIIVGMIGA 319


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +1

Query: 547 ELTGRRTGCSRGKGGS 594
           E TGR  G   GKGGS
Sbjct: 76  EETGRGKGRGHGKGGS 91


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +2

Query: 320 ALKLYEQLTILRRIETASGNLYKEKIIRGFCHLYSGQ 430
           AL    + T+L   ET +  +Y EK+     H +  Q
Sbjct: 463 ALSRRIKATVLFATETGTSQMYAEKLSELLGHAFHSQ 499


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +2

Query: 671 PSPTSTAPTGESRSLCTETEPPIRVNSSKPTHV 769
           PSPT ++P     S    T P  R  SS   +V
Sbjct: 62  PSPTGSSPQHSGSS--ASTSPAARTTSSMYPYV 92


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 226,130
Number of Sequences: 438
Number of extensions: 5255
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)