Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30980
(792 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g59900.1 68414.m06748 pyruvate dehydrogenase E1 component alp... 123 2e-28
At1g24180.1 68414.m03050 pyruvate dehydrogenase E1 component alp... 123 2e-28
At1g01090.1 68414.m00011 pyruvate dehydrogenase E1 component alp... 83 3e-16
At5g56330.1 68418.m07031 carbonic anhydrase family protein conta... 36 0.041
At4g16980.1 68417.m02560 arabinogalactan-protein family similar ... 35 0.054
At4g12470.1 68417.m01972 protease inhibitor/seed storage/lipid t... 32 0.50
At3g24550.1 68416.m03083 protein kinase family protein contains ... 31 0.66
At1g21400.1 68414.m02678 2-oxoisovalerate dehydrogenase, putativ... 31 0.66
At5g09300.2 68418.m01077 2-oxoisovalerate dehydrogenase, putativ... 30 1.5
At5g09300.1 68418.m01078 2-oxoisovalerate dehydrogenase, putativ... 30 1.5
At4g15560.1 68417.m02377 1-deoxy-D-xylulose 5-phosphate synthase... 30 1.5
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex... 30 2.0
At3g22120.1 68416.m02792 protease inhibitor/seed storage/lipid t... 30 2.0
At1g71980.1 68414.m08320 protease-associated zinc finger (C3HC4-... 30 2.0
At1g20130.1 68414.m02518 family II extracellular lipase, putativ... 30 2.0
At5g38560.1 68418.m04662 protein kinase family protein contains ... 29 2.7
At5g14920.1 68418.m01750 gibberellin-regulated family protein si... 29 2.7
At3g50580.1 68416.m05532 proline-rich family protein contains pr... 29 2.7
At1g79730.1 68414.m09300 hydroxyproline-rich glycoprotein family... 29 2.7
At5g60730.1 68418.m07620 anion-transporting ATPase family protei... 29 3.5
At4g22470.1 68417.m03245 protease inhibitor/seed storage/lipid t... 29 3.5
At1g62440.1 68414.m07044 leucine-rich repeat family protein / ex... 29 3.5
At5g10430.1 68418.m01209 arabinogalactan-protein (AGP4) identica... 29 4.7
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 29 4.7
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 29 4.7
At3g56410.2 68416.m06274 expressed protein 29 4.7
At3g56410.1 68416.m06273 expressed protein 29 4.7
At1g26150.1 68414.m03192 protein kinase family protein similar t... 29 4.7
At4g01985.1 68417.m00265 expressed protein 28 6.2
At2g43680.2 68415.m05430 calmodulin-binding family protein simil... 28 6.2
At2g43680.1 68415.m05429 calmodulin-binding family protein simil... 28 6.2
At2g39650.1 68415.m04862 expressed protein contains Pfam profile... 28 6.2
At1g53180.1 68414.m06027 expressed protein 28 6.2
At5g13660.1 68418.m01590 expressed protein 28 8.2
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 28 8.2
At3g21500.2 68416.m02713 1-deoxy-D-xylulose 5-phosphate synthase... 28 8.2
At3g21500.1 68416.m02712 1-deoxy-D-xylulose 5-phosphate synthase... 28 8.2
At2g25737.1 68415.m03087 expressed protein contains Pfam profil... 28 8.2
At1g26110.1 68414.m03186 expressed protein 28 8.2
>At1g59900.1 68414.m06748 pyruvate dehydrogenase E1 component alpha
subunit, mitochondrial (PDHE1-A) identical to SP|P52901
Pyruvate dehydrogenase E1 component alpha subunit,
mitochondrial precursor (EC 1.2.4.1) (PDHE1-A)
{Arabidopsis thaliana}
Length = 389
Score = 123 bits (296), Expect = 2e-28
Identities = 62/95 (65%), Positives = 71/95 (74%), Gaps = 2/95 (2%)
Frame = +1
Query: 481 DHRVSLSRMAYLMGVSVLGVLSELTGRRTGCSRGKGGSMHLYGR--NFYGGNGIVGAQVP 654
DH + L R G S+ V SEL GR+ GCS+GKGGSMH Y + +FYGG+GIVGAQVP
Sbjct: 118 DHCIFLGR-----GGSLHEVFSELMGRQAGCSKGKGGSMHFYKKESSFYGGHGIVGAQVP 172
Query: 655 LGAGVAFAHKYRADGGVTFALYGDGAANQGQLFEA 759
LG G+AFA KY + VTFALYGDGAANQGQLFEA
Sbjct: 173 LGCGIAFAQKYNKEEAVTFALYGDGAANQGQLFEA 207
Score = 89.8 bits (213), Expect = 2e-18
Identities = 40/82 (48%), Positives = 57/82 (69%)
Frame = +2
Query: 257 PYKLHKLDQGPATSATLTSEDALKLYEQLTILRRIETASGNLYKEKIIRGFCHLYSGQEA 436
P+ H D P+ S +S++ L + + ++RR+E A+ +LYK K+IRGFCHLY GQEA
Sbjct: 39 PFTAHLCDP-PSRSVESSSQELLDFFRTMALMRRMEIAADSLYKAKLIRGFCHLYDGQEA 97
Query: 437 VAVGMRAAMRDADSVITAYRCH 502
VA+GM AA+ D++ITAYR H
Sbjct: 98 VAIGMEAAITKKDAIITAYRDH 119
>At1g24180.1 68414.m03050 pyruvate dehydrogenase E1 component alpha
subunit, mitochondrial, putative similar to SP|P52901
Pyruvate dehydrogenase E1 component alpha subunit,
mitochondrial precursor (EC 1.2.4.1) (PDHE1-A)
{Arabidopsis thaliana}; contains Pfam profile PF00676:
Dehydrogenase E1 component
Length = 393
Score = 123 bits (296), Expect = 2e-28
Identities = 57/82 (69%), Positives = 65/82 (79%), Gaps = 2/82 (2%)
Frame = +1
Query: 520 GVSVLGVLSELTGRRTGCSRGKGGSMHLYGRN--FYGGNGIVGAQVPLGAGVAFAHKYRA 693
G ++ SEL GR+TGCS GKGGSMH Y ++ FYGG+GIVGAQ+PLG G+AFA KY
Sbjct: 130 GGKLVDAFSELMGRKTGCSHGKGGSMHFYKKDASFYGGHGIVGAQIPLGCGLAFAQKYNK 189
Query: 694 DGGVTFALYGDGAANQGQLFEA 759
D VTFALYGDGAANQGQLFEA
Sbjct: 190 DEAVTFALYGDGAANQGQLFEA 211
Score = 87.8 bits (208), Expect = 7e-18
Identities = 40/82 (48%), Positives = 57/82 (69%)
Frame = +2
Query: 257 PYKLHKLDQGPATSATLTSEDALKLYEQLTILRRIETASGNLYKEKIIRGFCHLYSGQEA 436
P+ H L + P+ S +SE+ L + + +RR+E A+ +LYK K+IRGFCHLY GQEA
Sbjct: 43 PFTSH-LCESPSRSVETSSEEILAFFRDMARMRRMEIAADSLYKAKLIRGFCHLYDGQEA 101
Query: 437 VAVGMRAAMRDADSVITAYRCH 502
+AVGM AA+ D++IT+YR H
Sbjct: 102 LAVGMEAAITKKDAIITSYRDH 123
>At1g01090.1 68414.m00011 pyruvate dehydrogenase E1 component alpha
subunit, chloroplast identical to pyruvate dehydrogenase
E1 alpha subunit GB:AAB86803 GI:2454182 from
[Arabidopsis thaliana]; identical to cDNA pyruvate
dehydrogenase E1 alpha subunit mRNA, nuclear gene
encoding plastid protein GI:2454181
Length = 428
Score = 82.6 bits (195), Expect = 3e-16
Identities = 43/93 (46%), Positives = 55/93 (59%), Gaps = 8/93 (8%)
Frame = +1
Query: 520 GVSVLGVLSELTGRRTGCSRGKGGSMHLYGR--NFYGGNGIVGAQVPLGAGVAFAHKYRA 693
GVS V+SEL G+ TGC RG+GGSMH++ + N GG +G +P+ G AF+ KYR
Sbjct: 151 GVSARAVMSELFGKVTGCCRGQGGSMHMFSKEHNMLGGFAFIGEGIPVATGAAFSSKYRR 210
Query: 694 D------GGVTFALYGDGAANQGQLFEAYTCLN 774
+ VT A +GDG N GQ FE CLN
Sbjct: 211 EVLKQDCDDVTVAFFGDGTCNNGQFFE---CLN 240
Score = 60.5 bits (140), Expect = 1e-09
Identities = 28/70 (40%), Positives = 41/70 (58%)
Frame = +2
Query: 293 TSATLTSEDALKLYEQLTILRRIETASGNLYKEKIIRGFCHLYSGQEAVAVGMRAAMRDA 472
TS +T E+ L+LYE + + R E +Y + GF HLY+GQEAV+ G + +
Sbjct: 75 TSLLITKEEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLTKS 134
Query: 473 DSVITAYRCH 502
DSV++ YR H
Sbjct: 135 DSVVSTYRDH 144
>At5g56330.1 68418.m07031 carbonic anhydrase family protein contains
proline-rich extensin domains, INTERPRO:IPR002965;
contains Pfam profile PF00194: Eukaryotic-type carbonic
anhydrase
Length = 350
Score = 35.5 bits (78), Expect = 0.041
Identities = 20/62 (32%), Positives = 27/62 (43%)
Frame = -2
Query: 704 TPPSARYLWAKATPAPNGTCAPTIPLPP*KLRPYKCMEPPLPREQPVLRPVSSESTPSTL 525
TPP + A P P APT P P +P PP P+ +P P + + TP+
Sbjct: 49 TPPKPKPKPAPTPPKPKPAPAPTPPKP----KPAPAPTPPKPKPKPAPTPPNPKPTPAPT 104
Query: 524 TP 519
P
Sbjct: 105 PP 106
Score = 32.7 bits (71), Expect = 0.29
Identities = 19/61 (31%), Positives = 24/61 (39%)
Frame = -2
Query: 701 PPSARYLWAKATPAPNGTCAPTIPLPP*KLRPYKCMEPPLPREQPVLRPVSSESTPSTLT 522
PP + A P P T APT P P +P PP P+ P P + P+
Sbjct: 28 PPKPKPAPAPTPPKPKPTPAPTPPKP----KPKPAPTPPKPKPAPAPTPPKPKPAPAPTP 83
Query: 521 P 519
P
Sbjct: 84 P 84
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/58 (31%), Positives = 23/58 (39%)
Frame = -2
Query: 704 TPPSARYLWAKATPAPNGTCAPTIPLPP*KLRPYKCMEPPLPREQPVLRPVSSESTPS 531
TPP + A P P APT P P +P PP P+ P P + P+
Sbjct: 60 TPPKPKPAPAPTPPKPKPAPAPTPPKP----KPKPAPTPPNPKPTPAPTPPKPKPAPA 113
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/50 (34%), Positives = 20/50 (40%)
Frame = -2
Query: 704 TPPSARYLWAKATPAPNGTCAPTIPLPP*KLRPYKCMEPPLPREQPVLRP 555
TPP + A P P APT P P +P PP P+ P P
Sbjct: 71 TPPKPKPAPAPTPPKPKPKPAPTPPNP----KPTPAPTPPKPKPAPAPAP 116
>At4g16980.1 68417.m02560 arabinogalactan-protein family similar to
arabinogalactan protein [Arabidopsis thaliana]
gi|10880495|gb|AAG24277; contains proline-rich extensin
domains, INTERPRO:IPR002965
Length = 164
Score = 35.1 bits (77), Expect = 0.054
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = -2
Query: 701 PPSARYLWAKATPAPNGTCAPTIPLPP*KLRPYKCMEPPLPREQPVLRPVSSESTPSTLT 522
PP TP P P +P+ P P PP+P P + P++ ++PS LT
Sbjct: 50 PPPVMSPMPMMTPPPMPMTPPPMPMTP---PPMPMAPPPMPMASPPMMPMTPSTSPSPLT 106
>At4g12470.1 68417.m01972 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to pEARLI
1 (Accession No. L43080): an Arabidopsis member of a
conserved gene family (PGF95-099), Plant Physiol. 109
(4), 1497 (1995); contains Pfam protease inhibitor/seed
storage/LTP family domain PF00234
Length = 161
Score = 31.9 bits (69), Expect = 0.50
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Frame = -2
Query: 683 LWAKATPAPNGTCAPTI---PLPP*KLRPYKCMEPPLPR-EQPVLRPVSSESTPST 528
L+ T A N C P+ P+P K +P +C PP P P RPV+ TP +
Sbjct: 18 LFFTLTVATNCNCKPSPKPKPVPSPKPKPVQCPPPPRPSVPSPNPRPVTPPRTPGS 73
>At3g24550.1 68416.m03083 protein kinase family protein contains
Pfam domain PF00069: Protein kinase domain
Length = 652
Score = 31.5 bits (68), Expect = 0.66
Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Frame = -2
Query: 710 NVTPPSARYLWAKATPAPNGTCAPTIPLPP*KLRPYKCMEPPLPREQPVLRPV-SSESTP 534
++ PPS P P+ + AP P PP P PP P + P P S+ TP
Sbjct: 63 SLPPPSPPGSLTPPLPQPSPS-APITPSPPSPTTPSNPRSPPSPNQGPPNTPSGSTPRTP 121
Query: 533 STLTP 519
S P
Sbjct: 122 SNTKP 126
>At1g21400.1 68414.m02678 2-oxoisovalerate dehydrogenase, putative /
3-methyl-2-oxobutanoate dehydrogenase, putative /
branched-chain alpha-keto acid dehydrogenase E1 alpha
subunit, putative similar to branched-chain alpha-keto
acid dehydrogenase E1-alpha subunit [Gallus gallus]
GI:12964598; contains Pfam profile PF00676:
Dehydrogenase E1 component
Length = 472
Score = 31.5 bits (68), Expect = 0.66
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Frame = +1
Query: 580 GKGGSMHL-YGRN---FYGGNGIVGAQVPLGAGVAFAHKYRADGGVTFALYGDGAANQG 744
GKG M + YG N ++ + + Q+P AGV ++ K T GDG ++G
Sbjct: 214 GKGRQMPIHYGSNRLNYFTISSPIATQLPQAAGVGYSLKMDKKNACTVTFIGDGGTSEG 272
>At5g09300.2 68418.m01077 2-oxoisovalerate dehydrogenase, putative /
3-methyl-2-oxobutanoate dehydrogenase, putative /
branched-chain alpha-keto acid dehydrogenase E1 alpha
subunit, putative similar to branched-chain alpha-keto
acid dehydrogenase E1-alpha subunit [Gallus gallus]
GI:12964598; contains Pfam profile PF00676:
Dehydrogenase E1 component
Length = 401
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/83 (20%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Frame = +1
Query: 520 GVSVLGVLSELTGRRTGCSRGKGGSMHLYGRN---FYGGNGIVGAQVPLGAGVAFAHKYR 690
G ++ ++ G ++ +G+ +H YG N ++ + + Q+P G A++ K
Sbjct: 125 GFTLQEFANQCFGNKSDYGKGRQMPVH-YGSNKLNYFTVSATIATQLPNAVGAAYSLKMD 183
Query: 691 ADGGVTFALYGDGAANQGQLFEA 759
+GDG ++G A
Sbjct: 184 KKDACAVTYFGDGGTSEGDFHAA 206
>At5g09300.1 68418.m01078 2-oxoisovalerate dehydrogenase, putative /
3-methyl-2-oxobutanoate dehydrogenase, putative /
branched-chain alpha-keto acid dehydrogenase E1 alpha
subunit, putative similar to branched-chain alpha-keto
acid dehydrogenase E1-alpha subunit [Gallus gallus]
GI:12964598; contains Pfam profile PF00676:
Dehydrogenase E1 component
Length = 472
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/83 (20%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Frame = +1
Query: 520 GVSVLGVLSELTGRRTGCSRGKGGSMHLYGRN---FYGGNGIVGAQVPLGAGVAFAHKYR 690
G ++ ++ G ++ +G+ +H YG N ++ + + Q+P G A++ K
Sbjct: 196 GFTLQEFANQCFGNKSDYGKGRQMPVH-YGSNKLNYFTVSATIATQLPNAVGAAYSLKMD 254
Query: 691 ADGGVTFALYGDGAANQGQLFEA 759
+GDG ++G A
Sbjct: 255 KKDACAVTYFGDGGTSEGDFHAA 277
>At4g15560.1 68417.m02377 1-deoxy-D-xylulose 5-phosphate synthase,
putative / 1-deoxyxylulose-5-phosphate synthase,
putative / DXP-synthase, putative (DEF) (CLA1) identical
to SP|Q38854 Probable 1-deoxy-D-xylulose 5-phosphate
synthase, chloroplast precursor (EC 4.1.3.37)
(1-deoxyxylulose-5-phosphate synthase) (DXP synthase)
(DXPS). [Mouse-ear cress] {Arabidopsis thaliana}, DEF
(deficient in photosynthesis) protein [Arabidopsis
thaliana] GI:1399261
Length = 717
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/51 (29%), Positives = 20/51 (39%)
Frame = +1
Query: 625 GNGIVGAQVPLGAGVAFAHKYRADGGVTFALYGDGAANQGQLFEAYTCLNY 777
G G + G G+A + A+ GDGA GQ +EA Y
Sbjct: 185 GTGHSSTTISAGLGMAVGRDLKGKNNNVVAVIGDGAMTAGQAYEAMNNAGY 235
>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 839
Score = 29.9 bits (64), Expect = 2.0
Identities = 21/55 (38%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
Frame = -2
Query: 668 TP-APNGTCAPTIPLPP*K-LRPYKCMEPPLPR---EQPVLRPVSSESTPSTLTP 519
TP +P P IP PP P PPLP P++ P S PST TP
Sbjct: 569 TPISPGQNSPPIIPSPPFTGPSPPSSPSPPLPPVIPSPPIVGPTPSSPPPSTPTP 623
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = -2
Query: 665 PAPNGTCAPTIPLPP*KLRPYKCMEPPLPREQPVLRPVSSESTPST 528
P+P+ + +P I +P P PP P P+ S TPST
Sbjct: 521 PSPSISPSPPITVPSPPSTPTSPGSPPSPSSPTPSSPIPSPPTPST 566
>At3g22120.1 68416.m02792 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to
SP|Q00451|PRF1_LYCES 36.4 kDa proline-rich protein
Lycopersicon esculentum, proline-rich cell wall protein
[Medicago sativa] GI:3818416; contains Pfam profile
PF00234 Protease inhibitor/seed storage/LTP family
Length = 334
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/49 (34%), Positives = 19/49 (38%)
Frame = -2
Query: 665 PAPNGTCAPTIPLPP*KLRPYKCMEPPLPREQPVLRPVSSESTPSTLTP 519
P P+ PT PP +P PP P P P TP T TP
Sbjct: 134 PPPSTPKPPTTKPPPSTPKPPHHKPPPTPCPPPTPTPTPPVVTPPTPTP 182
>At1g71980.1 68414.m08320 protease-associated zinc finger
(C3HC4-type RING finger) family protein identical to
ReMembR-H2 protein JR702 [Arabidopsis thaliana]
gi|6942149|gb|AAF32326; contains Pfam domain, PF02225:
protease-associated (PA) domain and Pfam domain,
PF00097: Zinc finger, C3HC4 type (RING finger);
identical to cDNA ReMembR-H2 protein JR702 mRNA, partial
cds GI:6942148
Length = 448
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = +2
Query: 506 WLISWALVCWGCSRS*RGAGPVAPGAREVPCICTDATSMVATGL 637
WL SW C C R R + P + P + + A+S ++ L
Sbjct: 262 WLTSWRTFCPVCKRDARTSTGEPPASESTPLLSSAASSFTSSSL 305
>At1g20130.1 68414.m02518 family II extracellular lipase, putative
contains Pfam profile PF00657: GDSL-like
Lipase/Acylhydrolase; similar to EXL3 (PMID:11431566)
Length = 1006
Score = 29.9 bits (64), Expect = 2.0
Identities = 20/63 (31%), Positives = 23/63 (36%)
Frame = -2
Query: 707 VTPPSARYLWAKATPAPNGTCAPTIPLPP*KLRPYKCMEPPLPREQPVLRPVSSESTPST 528
V PP+ K P P P P PP +P C PP P P +PV P
Sbjct: 63 VPPPACPPTPPKPQPKPAPPPEPK-PAPPPAPKPVPCPSPPKP-PAPTPKPVPPHGPPPK 120
Query: 527 LTP 519
P
Sbjct: 121 PAP 123
Score = 27.9 bits (59), Expect = 8.2
Identities = 17/49 (34%), Positives = 18/49 (36%)
Frame = -2
Query: 665 PAPNGTCAPTIPLPP*KLRPYKCMEPPLPREQPVLRPVSSESTPSTLTP 519
P P C PT P P K P P P P +PV S P P
Sbjct: 62 PVPPPACPPTPPKPQPKPAP---PPEPKPAPPPAPKPVPCPSPPKPPAP 107
>At5g38560.1 68418.m04662 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 681
Score = 29.5 bits (63), Expect = 2.7
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = -2
Query: 668 TPAPNGTCAPTIPLP-P*KLRPYKCMEPPLPREQPVLRPVSSESTPSTLTP 519
TP+P G P+ P P P P PP P P S+ + PSTL P
Sbjct: 145 TPSPPGE-TPSPPKPSPSTPTPTTTTSPPPPPATSASPPSSNPTDPSTLAP 194
>At5g14920.1 68418.m01750 gibberellin-regulated family protein
similar to SP|P46689 Gibberellin-regulated protein 1
precursor {Arabidopsis thaliana}; contains Pfam profile
PF02704: Gibberellin regulated protein
Length = 275
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = -2
Query: 641 PTIPLP-P*KLRPYKCMEPPLPREQPVLRPVSSESTPSTLTPMR 513
PT+P P P P ++PP P +P P + P+T P++
Sbjct: 36 PTLPSPSPATKPPSPALKPPTPSYKPPTLPTTPIKPPTTKPPVK 79
>At3g50580.1 68416.m05532 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 265
Score = 29.5 bits (63), Expect = 2.7
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Frame = -2
Query: 704 TPPSARYLWAKATP--APNGTCAPTIPLPP*KLRPYK-CMEPPLPREQPVLRPVSSESTP 534
+PPS TP +P+ P++P P K P + PP P++ P P S+P
Sbjct: 109 SPPSLTPFVPHPTPKKSPSPPPTPSLPPPAPKKSPSTPSLPPPTPKKSPPPPPSHHSSSP 168
Query: 533 S 531
S
Sbjct: 169 S 169
>At1g79730.1 68414.m09300 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 589
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = -2
Query: 701 PPSARYLWAKATPAPNGTCAPTIPLPP*KLRPYKCMEPPLP 579
PPS L A P P + P +P PP +PY PP P
Sbjct: 14 PPSQNSL---APPPPPPSLPPPVPPPPPSHQPYSYPPPPPP 51
>At5g60730.1 68418.m07620 anion-transporting ATPase family protein
low similarity to SP|O43681 Arsenical pump-driving
ATPase (EC 3.6.3.16) (Arsenite-translocating ATPase)
(Arsenical resistance ATPase) (Arsenite-transporting
ATPase) (ARSA) (ASNA-I) {Homo sapiens}; contains Pfam
profile PF02374: Anion-transporting ATPase
Length = 391
Score = 29.1 bits (62), Expect = 3.5
Identities = 21/54 (38%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +2
Query: 185 ESDCTGCSDKRKIQHEKRGDIRNQ-PYKLHKLDQGPATSATLTSEDALKLYEQL 343
ESDC CS +RK Q G I+N KL Q P A + ALK L
Sbjct: 335 ESDCKFCSIRRKEQTRVLGLIQNDTELSGLKLIQSPLLDAEIRGVPALKFMGDL 388
>At4g22470.1 68417.m03245 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to
hydroxyproline-rich glycoprotein DZ-HRGP from Volvox
carteri f. nagariensis GP|6523547; contains Pfam profile
PF00234 Protease inhibitor/seed storage/LTP family
Length = 375
Score = 29.1 bits (62), Expect = 3.5
Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Frame = -2
Query: 707 VTPPSARYLWAKATPAPNGTCAPTI---PLPP*KLRPYKCMEPPLPREQPVLRP 555
+TPP + A P P T P + PLPP L P + PP P P L P
Sbjct: 118 ITPPLSPPPPAITPPPPLATTPPALPPKPLPP-PLSPPQTTPPPPPAITPPLSP 170
>At1g62440.1 68414.m07044 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 826
Score = 29.1 bits (62), Expect = 3.5
Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 9/72 (12%)
Frame = -2
Query: 719 YRANVTPPSARYLWA-KATPAP-NGTCAP----TIPLPP*KLRP-YKCMEPPLP--REQP 567
+RA PPS++ + +ATP P + +P T P P K+ P K PP P +P
Sbjct: 452 FRATPPPPSSKMSPSFRATPPPPSSKMSPSFRATPPPPSSKMSPSVKAYPPPPPPPEYEP 511
Query: 566 VLRPVSSESTPS 531
P SSE +PS
Sbjct: 512 SPPPPSSEMSPS 523
>At5g10430.1 68418.m01209 arabinogalactan-protein (AGP4) identical
to gi_3883126_gb_AAC77826
Length = 135
Score = 28.7 bits (61), Expect = 4.7
Identities = 22/64 (34%), Positives = 25/64 (39%), Gaps = 2/64 (3%)
Frame = -2
Query: 704 TPPSARYLWAKATPAPNGTCAPTIPLPP*KLRPYKCMEPPLPREQPVLRPVSSESTPS-- 531
TPP ATP P T AP P PP P PP P P +S P
Sbjct: 36 TPPPVATPPPVATPPPAATPAPATP-PP-AATPAPATTPPSVAPSPADVPTASPPAPEGP 93
Query: 530 TLTP 519
T++P
Sbjct: 94 TVSP 97
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 28.7 bits (61), Expect = 4.7
Identities = 18/40 (45%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = +1
Query: 562 RTGCSRGKGGSMHLYGRNFYGGNGIVGA-QVPLGAGVAFA 678
R G G GG YG YGG G GA GAGV A
Sbjct: 571 RGGGGGGGGGGSDYYGGGGYGGGGYGGAPSGGYGAGVTSA 610
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 28.7 bits (61), Expect = 4.7
Identities = 18/40 (45%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = +1
Query: 562 RTGCSRGKGGSMHLYGRNFYGGNGIVGA-QVPLGAGVAFA 678
R G G GG YG YGG G GA GAGV A
Sbjct: 571 RGGGGGGGGGGSDYYGGGGYGGGGYGGAPSGGYGAGVTSA 610
>At3g56410.2 68416.m06274 expressed protein
Length = 1535
Score = 28.7 bits (61), Expect = 4.7
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
Frame = +2
Query: 608 DATSMVATGL--LVRRFRWEPEWPSPTSTAP----TGESRSLCTETEPP 736
DATS G ++ RWEP+ T+T P + ++RSL E E P
Sbjct: 81 DATSYKCGGCDSILHAKRWEPDGNDHTNTIPEALLSSQNRSLSAEVESP 129
>At3g56410.1 68416.m06273 expressed protein
Length = 1488
Score = 28.7 bits (61), Expect = 4.7
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
Frame = +2
Query: 608 DATSMVATGL--LVRRFRWEPEWPSPTSTAP----TGESRSLCTETEPP 736
DATS G ++ RWEP+ T+T P + ++RSL E E P
Sbjct: 34 DATSYKCGGCDSILHAKRWEPDGNDHTNTIPEALLSSQNRSLSAEVESP 82
>At1g26150.1 68414.m03192 protein kinase family protein similar to
Pto kinase interactor 1 GI:3668069 from [Lycopersicon
esculentum]
Length = 760
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/49 (34%), Positives = 20/49 (40%)
Frame = -2
Query: 665 PAPNGTCAPTIPLPP*KLRPYKCMEPPLPREQPVLRPVSSESTPSTLTP 519
P P T AP P P PP P E P P++S S P+ P
Sbjct: 101 PPPLPTEAPPPANPVSSPPPESSPPPPPPTEAPPTTPITSPSPPTNPPP 149
>At4g01985.1 68417.m00265 expressed protein
Length = 579
Score = 28.3 bits (60), Expect = 6.2
Identities = 26/67 (38%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Frame = +1
Query: 556 GRRTGCSRGKGGSMHLYGRNFYGG--NGIVGAQV--PLGAGVAFAHKYRADGGVTFALYG 723
G TG S G GG + + G GG G VG V +G GV A GGV A G
Sbjct: 471 GGGTGGSVGAGGGVGVGGGGGIGGGAGGGVGGGVGGGVGGGVRGAVGGAVGGGVGGAGRG 530
Query: 724 DGAANQG 744
G A+ G
Sbjct: 531 SGGASGG 537
>At2g43680.2 68415.m05430 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 669
Score = 28.3 bits (60), Expect = 6.2
Identities = 20/63 (31%), Positives = 24/63 (38%)
Frame = -2
Query: 701 PPSARYLWAKATPAPNGTCAPTIPLPP*KLRPYKCMEPPLPREQPVLRPVSSESTPSTLT 522
PPS R +A P PT P PP L ++ P P +P S S P L
Sbjct: 230 PPSPRAASLRADPPRLDAARPTTPRPPSPLADAPRLDAPRPTTP---KPPSPRSDPPRLD 286
Query: 521 PMR 513
R
Sbjct: 287 APR 289
>At2g43680.1 68415.m05429 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 668
Score = 28.3 bits (60), Expect = 6.2
Identities = 20/63 (31%), Positives = 24/63 (38%)
Frame = -2
Query: 701 PPSARYLWAKATPAPNGTCAPTIPLPP*KLRPYKCMEPPLPREQPVLRPVSSESTPSTLT 522
PPS R +A P PT P PP L ++ P P +P S S P L
Sbjct: 229 PPSPRAASLRADPPRLDAARPTTPRPPSPLADAPRLDAPRPTTP---KPPSPRSDPPRLD 285
Query: 521 PMR 513
R
Sbjct: 286 APR 288
>At2g39650.1 68415.m04862 expressed protein contains Pfam profile
PF04720: Protein of unknown function (DUF506)
Length = 291
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = +3
Query: 123 IDKMSKLIPSAAKFLAGNTITKVTA--PVVATNAKYSTKKEATFEISPTNSINWIRALQH 296
+D +++ S G T+ ++ V+ AK+S K+ + + P S+N++R+ H
Sbjct: 177 VDSYQRIMESLPVVYVG-TVARLNQFLQVMVDAAKFSLKQNS-MPLPPWRSLNYLRSKWH 234
Query: 297 QPH 305
PH
Sbjct: 235 SPH 237
>At1g53180.1 68414.m06027 expressed protein
Length = 358
Score = 28.3 bits (60), Expect = 6.2
Identities = 23/54 (42%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = +1
Query: 403 WFLSPVFRTRSRGSRYESSDARCRLSDHRVSLSRMAYLMGVSVLG-VLSELTGR 561
WF +F RSRG RY SD S S S MG S +G VL TGR
Sbjct: 19 WFFENLFTRRSRGLRYCHSDPYPSSS----STSTSPEKMGDSDIGKVLEASTGR 68
>At5g13660.1 68418.m01590 expressed protein
Length = 537
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = -1
Query: 711 ERDSPVGAVLVGEGHSGSQRNLRTNNPVATIEVASVQMHGTSLA 580
E+ +PV + + H GS NL T N V+ + VQ++G ++
Sbjct: 96 EQCNPVSSFGLPLAHHGSSFNLDTINKVSNVPEFMVQLYGQGIS 139
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 27.9 bits (59), Expect = 8.2
Identities = 23/59 (38%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = +1
Query: 559 RRTGCSRGKGGSMHLYGRNFYGG--NGIVGAQVPLGAGVAFAHKYRADGGVTFALYGDG 729
RR SRG GG+ + G YGG G GA +P G G Y G +A YG G
Sbjct: 562 RRESFSRGGGGADYYGGGGGYGGVPGGGYGA-MPGGYGPVPGGGYGNVPGGGYAPYGRG 619
>At3g21500.2 68416.m02713 1-deoxy-D-xylulose 5-phosphate synthase,
putative / 1-deoxyxylulose-5-phosphate synthase,
putative / DXP-synthase, putative strong similarity to
1-D-deoxyxylulose 5-phosphate synthase [Lycopersicon
esculentum] GI:5059160, DEF (deficient in
photosynthesis) protein [Arabidopsis thaliana]
GI:1399261; ; contains Pfam profiles PF02779:
Transketolase, pyridine binding domain, PF02780:
Transketolase, C-terminal domain
Length = 629
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/51 (27%), Positives = 20/51 (39%)
Frame = +1
Query: 625 GNGIVGAQVPLGAGVAFAHKYRADGGVTFALYGDGAANQGQLFEAYTCLNY 777
G G + G G+A + ++ GDGA GQ +EA Y
Sbjct: 163 GTGHSSTTLSAGLGMAVGRDLKGMNNSVVSVIGDGAMTAGQAYEAMNNAGY 213
>At3g21500.1 68416.m02712 1-deoxy-D-xylulose 5-phosphate synthase,
putative / 1-deoxyxylulose-5-phosphate synthase,
putative / DXP-synthase, putative strong similarity to
1-D-deoxyxylulose 5-phosphate synthase [Lycopersicon
esculentum] GI:5059160, DEF (deficient in
photosynthesis) protein [Arabidopsis thaliana]
GI:1399261; ; contains Pfam profiles PF02779:
Transketolase, pyridine binding domain, PF02780:
Transketolase, C-terminal domain
Length = 628
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/51 (27%), Positives = 20/51 (39%)
Frame = +1
Query: 625 GNGIVGAQVPLGAGVAFAHKYRADGGVTFALYGDGAANQGQLFEAYTCLNY 777
G G + G G+A + ++ GDGA GQ +EA Y
Sbjct: 163 GTGHSSTTLSAGLGMAVGRDLKGMNNSVVSVIGDGAMTAGQAYEAMNNAGY 213
>At2g25737.1 68415.m03087 expressed protein contains Pfam profile:
PF01925 domain of unknown function DUF81
Length = 476
Score = 27.9 bits (59), Expect = 8.2
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Frame = +1
Query: 463 ARCRLSDHRVSLSRMAYLMGVSVLGVLSELTGRRTGCSRGKGGSMHLYGR-----NFYGG 627
A C ++ ++L ++ +GVS ++ GRR S+G+G S G+ F
Sbjct: 283 ANCSVAYWVINLLQIPVAVGVSGYEAVALYQGRRIIASKGQGDSNFTVGQLVMYCTFGII 342
Query: 628 NGIVGAQVPLGAG 666
GIVG + LG G
Sbjct: 343 AGIVGGLLGLGGG 355
>At1g26110.1 68414.m03186 expressed protein
Length = 611
Score = 27.9 bits (59), Expect = 8.2
Identities = 25/83 (30%), Positives = 32/83 (38%)
Frame = +1
Query: 451 ESSDARCRLSDHRVSLSRMAYLMGVSVLGVLSELTGRRTGCSRGKGGSMHLYGRNFYGGN 630
ES ++R R S+ R + G S G R G RG G + Y R YGG
Sbjct: 531 ESQNSRPRFSEQRK--------LDTETFGEFSRFRGGRGG--RGGYGRNNGYSRGGYGGR 580
Query: 631 GIVGAQVPLGAGVAFAHKYRADG 699
G G G G + + R G
Sbjct: 581 GYGGYGGRGGGGGGYGYGGRGQG 603
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,190,446
Number of Sequences: 28952
Number of extensions: 371300
Number of successful extensions: 1263
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 1097
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1243
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1785055200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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