Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30979
         (804 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1556.02c |sdh1||succinate dehydrogenase Sdh1|Schizosaccharom...    29   1.0  
SPAC1002.20 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    28   1.4  
SPAC8F11.10c |pvg1|SPACUNK4.18|pyruvyltransferase |Schizosacchar...    27   2.4  
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti...    27   3.1  
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch...    27   3.1  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   9.5  

>SPAC1556.02c |sdh1||succinate dehydrogenase
           Sdh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 9/38 (23%), Positives = 24/38 (63%)
 Frame = +3

Query: 570 GFLIENRLLKLIEKYQPVSRNLCTLDAIFMALDIQAEE 683
           G+L+ ++  + +E+Y P +++L + D +  A+ ++  E
Sbjct: 309 GYLLNSKGERFMERYAPTAKDLASRDVVSRAMTVEIRE 346


>SPAC1002.20 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +3

Query: 687 IEILCKTFLNYAFCPILCW 743
           ++ILC +FLNY+F  I C+
Sbjct: 70  LKILCPSFLNYSFINIYCF 88


>SPAC8F11.10c |pvg1|SPACUNK4.18|pyruvyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 401

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = +3

Query: 525 ERLVRHILQLVTDNTGFLIENRLLKLIEKYQPVSRNLCTLDAIFMALD 668
           +RL  HIL  +      ++EN  +  I  Y     + CTLD + + +D
Sbjct: 336 DRLHAHILSTLMGIPHIVVENSQMGKITNYHNTWLHGCTLDGVSVVVD 383


>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
           subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -1

Query: 126 DILLSFLFC-CDRTKTFSSSRFFRIYNIPLMVKVHHF 19
           D+L+ +  C  D       ++  RI+N PL+ ++H+F
Sbjct: 375 DVLIGYNICNFDIPYLLDRAKSLRIHNFPLLGRIHNF 411


>SPCC417.08 |tef3||translation elongation factor
           eEF3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1047

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -1

Query: 318 ATMRCHTPYLAKLIIVNVLE 259
           A +RC TPY  K I+ +VLE
Sbjct: 121 AIVRCTTPYAVKAIVPSVLE 140


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = -1

Query: 219 NFTISASALISSMAPSSAALRIFARSALATSDILLSFLFCCDRTKTFSSS 70
           ++  S+S + SS +PSS++      S+L+TS I  +       + + SSS
Sbjct: 208 SYLSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSS 257


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,785,573
Number of Sequences: 5004
Number of extensions: 49107
Number of successful extensions: 152
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)