Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30979
         (804 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0364 + 13007002-13007538,13007965-13008393,13008649-130089...    32   0.61 
09_03_0191 - 13322141-13322458,13322767-13323033,13324836-133250...    28   7.6  

>05_03_0364 +
           13007002-13007538,13007965-13008393,13008649-13008990,
           13009904-13010035,13010432-13010596
          Length = 534

 Score = 31.9 bits (69), Expect = 0.61
 Identities = 17/57 (29%), Positives = 28/57 (49%)
 Frame = -1

Query: 198 ALISSMAPSSAALRIFARSALATSDILLSFLFCCDRTKTFSSSRFFRIYNIPLMVKV 28
           A+I+   PS  AL +    +L   D +L FL C  +        + RIY++PL + +
Sbjct: 153 AMITHPKPSEEALIVPTNKSLVLQDSMLLFLTCPSKVPLEVVPIWIRIYDLPLALMI 209


>09_03_0191 -
           13322141-13322458,13322767-13323033,13324836-13325048,
           13325153-13325349,13325432-13325636
          Length = 399

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +3

Query: 576 LIENRLLKLIEKYQPVS--RNLCTLDAIFMALDIQAEEDIEILCKTFLNY 719
           ++   L KLI +    S  R L   + + ++L+ Q +ED+ +L   F NY
Sbjct: 188 MVSEALSKLISRLNIESKIRTLTDKEELVLSLERQYQEDVGVLAALFFNY 237


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,790,428
Number of Sequences: 37544
Number of extensions: 272009
Number of successful extensions: 614
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)