Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30979
         (804 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56469| Best HMM Match : Exo_endo_phos (HMM E-Value=1.2e-12)         31   1.4  
SB_21614| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-41)             31   1.4  
SB_10952| Best HMM Match : Exo_endo_phos (HMM E-Value=4.1e-08)         31   1.4  
SB_57427| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00044)         31   1.4  
SB_38448| Best HMM Match : Exo_endo_phos (HMM E-Value=1.2e-12)         31   1.4  
SB_10116| Best HMM Match : RVT_1 (HMM E-Value=2.5e-33)                 31   1.4  
SB_33083| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_17097| Best HMM Match : F-box (HMM E-Value=3.8)                     29   4.4  
SB_15167| Best HMM Match : F-box (HMM E-Value=3.8)                     29   4.4  
SB_29947| Best HMM Match : Fasciclin (HMM E-Value=2.3e-33)             29   5.8  
SB_3348| Best HMM Match : Borrelia_orfA (HMM E-Value=0.71)             29   5.8  
SB_14638| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_20761| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  

>SB_56469| Best HMM Match : Exo_endo_phos (HMM E-Value=1.2e-12)
          Length = 652

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = +3

Query: 525 ERLVRHILQLVTDNT-GFLIENRLLKLIEKYQPVSRNLCTLDAIFMALDIQAEEDIEIL 698
           + L  +IL  +TD+   FLI N+L  L + Y+   R+   LD   +  DIQ+   I++L
Sbjct: 491 QTLSGNILTGITDHLPNFLIINKLAPLPQSYKMYKRDFSKLDKEALLSDIQSINWIDVL 549


>SB_21614| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-41)
          Length = 1047

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = +3

Query: 525 ERLVRHILQLVTDNT-GFLIENRLLKLIEKYQPVSRNLCTLDAIFMALDIQAEEDIEIL 698
           + L  +IL  +TD+   FLI N+L  L + Y+   R+   LD   +  DIQ+   I++L
Sbjct: 497 QTLSGNILTGITDHLPNFLIINKLAPLPQSYKMYKRDFSKLDKEALLSDIQSFNWIDVL 555


>SB_10952| Best HMM Match : Exo_endo_phos (HMM E-Value=4.1e-08)
          Length = 558

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = +3

Query: 525 ERLVRHILQLVTDNT-GFLIENRLLKLIEKYQPVSRNLCTLDAIFMALDIQAEEDIEIL 698
           + L  +IL  +TD+   FLI N+L  L + Y+   R+   LD   +  DIQ+   I++L
Sbjct: 243 QTLSGNILTGITDHLPNFLIINKLAPLPQSYKMYKRDFSKLDKEALLSDIQSFNWIDVL 301


>SB_57427| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00044)
          Length = 1693

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = +3

Query: 525  ERLVRHILQLVTDNT-GFLIENRLLKLIEKYQPVSRNLCTLDAIFMALDIQAEEDIEIL 698
            + L  +IL  +TD+   FLI N+L  L + Y+   R+   LD   +  DIQ+   I++L
Sbjct: 1276 QTLSGNILTGITDHLPNFLIINKLAPLPQSYKMYKRDFSKLDKEALLSDIQSINWIDVL 1334


>SB_38448| Best HMM Match : Exo_endo_phos (HMM E-Value=1.2e-12)
          Length = 343

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = +3

Query: 525 ERLVRHILQLVTDNT-GFLIENRLLKLIEKYQPVSRNLCTLDAIFMALDIQAEEDIEIL 698
           + L  +IL  +TD+   FLI N+L  L + Y+   R+   LD   +  DIQ+   I++L
Sbjct: 247 QTLSGNILTGITDHLPNFLIINKLAPLPQSYKMYKRDFSKLDKEALLSDIQSINWIDVL 305


>SB_10116| Best HMM Match : RVT_1 (HMM E-Value=2.5e-33)
          Length = 759

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = +3

Query: 525 ERLVRHILQLVTDNT-GFLIENRLLKLIEKYQPVSRNLCTLDAIFMALDIQAEEDIEIL 698
           + L  +IL  +TD+   FLI N+L  L + Y+   R+   LD   +  DIQ+   I++L
Sbjct: 223 QTLSGNILTGITDHLPNFLIINKLAPLPQSYKMYKRDFSKLDKEALLSDIQSINWIDVL 281


>SB_33083| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 413

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = +3

Query: 525 ERLVRHILQLVTDNT-GFLIENRLLKLIEKYQPVSRNLCTLDAIFMALDIQAEEDIEIL 698
           + L  +IL  +TD+   FLI N+L  L + Y+   R+   LD   +  D Q+   I++L
Sbjct: 150 QTLSGNILTGITDHLPNFLIINKLAPLPQSYKMYKRDFSKLDKEALLSDFQSINWIDVL 208


>SB_17097| Best HMM Match : F-box (HMM E-Value=3.8)
          Length = 408

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 292 IWRMATHRCSELSKELRQGEVALHA 366
           +WR +T     LSK +RQG+  +H+
Sbjct: 383 LWRHSTQSYPSLSKSIRQGQATMHS 407


>SB_15167| Best HMM Match : F-box (HMM E-Value=3.8)
          Length = 392

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 292 IWRMATHRCSELSKELRQGEVALHA 366
           +WR +T     LSK +RQG+  +H+
Sbjct: 367 LWRHSTQSYPSLSKSIRQGQATMHS 391


>SB_29947| Best HMM Match : Fasciclin (HMM E-Value=2.3e-33)
          Length = 725

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 16/46 (34%), Positives = 29/46 (63%)
 Frame = -1

Query: 270 NVLELTDFFSKSSIVCINFTISASALISSMAPSSAALRIFARSALA 133
           N+ EL+ F SK+++    + ++++ L++  APSSAA+   A   LA
Sbjct: 636 NLKELSKFVSKTNL---RYYLASAPLMTLFAPSSAAIASIASDDLA 678


>SB_3348| Best HMM Match : Borrelia_orfA (HMM E-Value=0.71)
          Length = 500

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +3

Query: 555 VTDNT-GFLIENRLLKLIEKYQPVSRNLCTLDAIFMALDIQAEEDIEIL 698
           +TD+   FLI N+L  L + Y+   R+   LD   +  DIQ+   I++L
Sbjct: 59  ITDHLPNFLIINKLAPLPQSYKMYKRDFSKLDKEALLSDIQSINWIDVL 107


>SB_14638| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 258

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +3

Query: 588 RLLKLIEKYQPV--SRNLCTLDAIFMALDIQAEED 686
           R+L  I++Y P+  S NL   D + MALDIQ   D
Sbjct: 78  RVLYYIKEYVPIKDSSNLMIEDWVMMALDIQKHYD 112


>SB_20761| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 506

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 14/54 (25%), Positives = 28/54 (51%)
 Frame = -1

Query: 312 MRCHTPYLAKLIIVNVLELTDFFSKSSIVCINFTISASALISSMAPSSAALRIF 151
           ++CHT Y+  LI+  V +  +  +K  ++C    + A A I  ++  +  L +F
Sbjct: 14  LQCHTSYIHPLIVYLVKDCVN-STKKDVIC-TVCVQACAWIRKLSSVNVTLTVF 65


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,386,661
Number of Sequences: 59808
Number of extensions: 348508
Number of successful extensions: 754
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2227723674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)