Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30978
         (478 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A4I4M3 Cluster: Putative uncharacterized protein; n=3; ...    35   1.1  
UniRef50_Q14MS8 Cluster: Transposase of is30 family protein; n=5...    33   4.3  

>UniRef50_A4I4M3 Cluster: Putative uncharacterized protein; n=3;
           Leishmania|Rep: Putative uncharacterized protein -
           Leishmania infantum
          Length = 680

 Score = 34.7 bits (76), Expect = 1.1
 Identities = 18/48 (37%), Positives = 25/48 (52%)
 Frame = -1

Query: 172 HVCGNVLVQLNTVDIAVVLFRSCVTIPGIFLKIYTFTIVLNKCHSHLT 29
           +VCG VL+Q         +F    T+PG  L IY F +++NK H   T
Sbjct: 434 YVCG-VLLQYLNCRAWKNIFTCSFTLPGAMLLIYIFILIINKAHGATT 480


>UniRef50_Q14MS8 Cluster: Transposase of is30 family protein; n=5;
           Spiroplasma citri|Rep: Transposase of is30 family
           protein - Spiroplasma citri
          Length = 330

 Score = 32.7 bits (71), Expect = 4.3
 Identities = 14/51 (27%), Positives = 28/51 (54%)
 Frame = +2

Query: 65  ECIYFKKYSRNCHTRPKQHNRYIYCIKLNKNISTDMGNACAACLVNGIAKV 217
           +CI  K++   C T  ++ + Y  C KLN++ S ++  A  + + N + K+
Sbjct: 184 DCIVGKEHQSACLTITEEKSLYTICFKLNQHNSEEVNKALKSIIRNKLYKI 234


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 426,767,321
Number of Sequences: 1657284
Number of extensions: 7819529
Number of successful extensions: 17317
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 16799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17308
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 26870548160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)