Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30978
         (478 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        23   1.4  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    22   2.5  
EF222291-1|ABN79651.1|  374|Tribolium castaneum cardioactive pep...    21   5.8  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    21   7.7  

>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 237 PFPVHRTTLAIPLTRQAAH 181
           P P H T+  +PLT   AH
Sbjct: 326 PVPGHSTSPNLPLTHNIAH 344


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 22.2 bits (45), Expect = 2.5
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +2

Query: 71  IYFKKYSRNCHTRPKQHNR 127
           ++FK     C  + KQHN+
Sbjct: 115 VWFKNRRAKCRQQQKQHNQ 133


>EF222291-1|ABN79651.1|  374|Tribolium castaneum cardioactive
           peptide receptor 1 protein.
          Length = 374

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 108 DLNNTTAISTVLS*TRTFPQTWVMRVLLV 194
           D NNT+  +     T  F   WV+ V++V
Sbjct: 11  DSNNTSLDAFYFFETEQFTLLWVLFVIIV 39


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +2

Query: 74  YFKKYSRNCHTRPKQHNRYIYC 139
           Y  +  +NC    +Q NR  YC
Sbjct: 120 YACREEKNCIIDKRQRNRCQYC 141


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,028
Number of Sequences: 336
Number of extensions: 2218
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 11141978
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)