Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30978
         (478 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43678| Best HMM Match : Ribonuclease_BN (HMM E-Value=0.81)          30   1.1  
SB_11394| Best HMM Match : GntR (HMM E-Value=7.9)                      29   2.6  
SB_49487| Best HMM Match : Zip (HMM E-Value=0.014)                     28   3.4  
SB_15491| Best HMM Match : zf-C3HC4 (HMM E-Value=0.079)                27   6.0  
SB_17079| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  

>SB_43678| Best HMM Match : Ribonuclease_BN (HMM E-Value=0.81)
          Length = 468

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 15/60 (25%), Positives = 29/60 (48%)
 Frame = -1

Query: 193 TSSTRITHVCGNVLVQLNTVDIAVVLFRSCVTIPGIFLKIYTFTIVLNKCHSHLTVTLRS 14
           +S TR+     NV   +  + I   +FR   ++  +F   ++ T+V+    S + VT+ S
Sbjct: 50  SSLTRLVTYSSNVTRDVTVISIVTSIFRISSSVISVFTLSFSVTLVVTVISSVIVVTISS 109


>SB_11394| Best HMM Match : GntR (HMM E-Value=7.9)
          Length = 451

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 297 CCSYVIHWECLSCQYYCTS 353
           CCS  +H +C SC+  C+S
Sbjct: 262 CCSCRVHMKCSSCRVVCSS 280


>SB_49487| Best HMM Match : Zip (HMM E-Value=0.014)
          Length = 510

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 95  NCHTRPKQHNRYIYCIKLNKNISTDMGN 178
           NCH   KQHNR++  ++ N+ +     N
Sbjct: 456 NCHLMDKQHNRHLMNMQQNRQLMDKQTN 483


>SB_15491| Best HMM Match : zf-C3HC4 (HMM E-Value=0.079)
          Length = 689

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = -3

Query: 191 KQHTHYPCLWK 159
           KQ  HYPCLWK
Sbjct: 201 KQPCHYPCLWK 211


>SB_17079| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2537

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 148  QLNTVDIAVVLFRSCVTIPGIFLKIYTFTIVL 53
            Q  T+++   + RS  T+PG    IYT T +L
Sbjct: 1841 QPQTLEVLFDILRSITTVPGANFSIYTVTNLL 1872


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,592,724
Number of Sequences: 59808
Number of extensions: 264821
Number of successful extensions: 543
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 989515521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)