Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30978
         (478 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    22   2.9  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    22   3.9  
AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.            22   3.9  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    22   3.9  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   5.1  
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    21   6.8  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = +3

Query: 258 WIQDCWGGSRESGCCSYVIHWECLSCQYYCT 350
           W+ D     RE G    +  W+  + +YY T
Sbjct: 58  WVLDKLKAERERGITIDIALWKFETAKYYVT 88


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = +3

Query: 258 WIQDCWGGSRESGCCSYVIHWECLSCQYYCT 350
           W+ D     RE G    +  W+  + +YY T
Sbjct: 1   WVLDKLKAERERGITIDIALWKFETSKYYVT 31


>AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.
          Length = 50

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +2

Query: 86  YSRNCHTRPKQHNRYIY 136
           ++ +C  +PK HN  IY
Sbjct: 23  WALDCSIKPKDHNGSIY 39


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = +3

Query: 258 WIQDCWGGSRESGCCSYVIHWECLSCQYYCT 350
           W+ D     RE G    +  W+  + +YY T
Sbjct: 58  WVLDKLKAERERGITIDIALWKFETSKYYVT 88


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 462 LYCSKLFFNINLWSRF 415
           + C   FF +NLWS F
Sbjct: 345 IICWLPFFVVNLWSGF 360


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 21.0 bits (42), Expect = 6.8
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = -3

Query: 425 GHGFSNETLHILPLVYHALIILEV 354
           G+G + +T H+LP  +  +++  V
Sbjct: 58  GYGSNKKTRHMLPTGFRKVLVHNV 81


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,192
Number of Sequences: 438
Number of extensions: 2483
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12928545
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)