Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30977
         (719 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    25   0.82 
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    25   0.82 
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    24   1.4  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    23   1.9  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    22   5.8  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    21   7.6  

>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 24.6 bits (51), Expect = 0.82
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -2

Query: 355 QADHPRQVQRHHQVAGFQPAGRQG 284
           Q  HP+  Q HHQ       G+QG
Sbjct: 172 QEQHPQHHQPHHQQQHMMYGGQQG 195


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 24.6 bits (51), Expect = 0.82
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -2

Query: 355 QADHPRQVQRHHQVAGFQPAGRQG 284
           Q  HP+  Q HHQ       G+QG
Sbjct: 174 QEQHPQHHQPHHQQQHMMYGGQQG 197


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 12/59 (20%), Positives = 30/59 (50%)
 Frame = -1

Query: 650  PRGVPQIEVTFDIDANGILNVSAIEKSTNKENKITITNDKGRLSKEETSVWLMRQRSTE 474
            P+G  +  +  +I ANG+L+  +I+++   ++ +           ++TS+ ++ Q   E
Sbjct: 839  PKGDNRYTIREEILANGVLSGLSIKRTERSDSALFTCVATNAFGSDDTSINMIVQEVPE 897


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = -1

Query: 677 FELTGIPPAPRGVPQIEVTFDIDANGILNVSAIEKSTNK 561
           +   G+  A   V  I+   D+D NG  N + ++K+  K
Sbjct: 56  YSFIGVNDADWSVLVIDPELDVDQNGFRNFTNLKKTHPK 94


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -3

Query: 411 SMKSTMEDEKLKEKISDSD 355
           S+ S  EDE+++ ++SD D
Sbjct: 18  SLLSKKEDEEVEHRLSDRD 36


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 168 PEPEVPPPGLEALAPPS 118
           P P+VPP  L  + PP+
Sbjct: 176 PLPQVPPLPLPPIFPPT 192


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,149
Number of Sequences: 336
Number of extensions: 3009
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19155320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)