Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30976
         (660 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0CMD2 Cluster: Chromosome undetermined scaffold_21, wh...    33   4.6  
UniRef50_Q8RDI1 Cluster: Putative uncharacterized protein; n=1; ...    33   6.1  

>UniRef50_A0CMD2 Cluster: Chromosome undetermined scaffold_21, whole
           genome shotgun sequence; n=3; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_21,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 693

 Score = 33.5 bits (73), Expect = 4.6
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +3

Query: 270 INDIN-NKHRVVCTHVRNDCQFWVIHNNDD*MNIKNKYRNLKTYIC 404
           +ND + N    +  +++   +FW   N+D  +NI +KY+N K  IC
Sbjct: 370 LNDEDPNTSIAILNYIKRVLEFWDTRNDDKYLNIFSKYKNKKICIC 415


>UniRef50_Q8RDI1 Cluster: Putative uncharacterized protein; n=1;
           Thermoanaerobacter tengcongensis|Rep: Putative
           uncharacterized protein - Thermoanaerobacter
           tengcongensis
          Length = 115

 Score = 33.1 bits (72), Expect = 6.1
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -1

Query: 402 IYTFLSSYIYFLYSFNRHYYV*PKTDSHYEHVCRRLCVYC 283
           +Y FL SY   L SF + YY   K D +   +C+   +YC
Sbjct: 11  LYRFLQSYAILLLSFFKTYYFKNKEDLNCLFLCQLQTIYC 50


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 500,665,001
Number of Sequences: 1657284
Number of extensions: 9141019
Number of successful extensions: 19093
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 17332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18980
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 50000004659
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)