Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30976
         (660 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces p...    31   0.19 
SPCC162.05 |coq3||hexaprenyldihydroxybenzoate methyltransferase|...    27   1.8  

>SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 226

 Score = 30.7 bits (66), Expect = 0.19
 Identities = 13/53 (24%), Positives = 25/53 (47%)
 Frame = -2

Query: 578 LVYFFIKVYLNLNFNHEIWYFFFILISGTT*ETFFFILIPQFYYEVLSILSET 420
           L+Y F+ ++L   F    W +F + +SGT     + + +     E+  + S T
Sbjct: 170 LIYLFLSIHLFYVFQSFPWTYFCLAVSGTCISELYVLFVHPVVQELFHLESHT 222


>SPCC162.05 |coq3||hexaprenyldihydroxybenzoate
           methyltransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 271

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 360 MNIKNKYRNLKTYICYIYTGCLRKNR*HLI 449
           MNI NK +N+K+Y   +  G L + R H +
Sbjct: 1   MNILNKVKNVKSYTRLVRQGFLSQQRNHSV 30


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,256,392
Number of Sequences: 5004
Number of extensions: 43312
Number of successful extensions: 86
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)