Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30976
         (660 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58209| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_13743| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_7018| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.7  

>SB_58209| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 161

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 270 INDINNKHRVVCTHVRNDCQFWVIHNNDD 356
           + D+ N H + CT   +D Q +V  NN+D
Sbjct: 86  LGDLINAHNMNCTMYADDTQIYVSVNNND 114


>SB_13743| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 559

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = -1

Query: 333 KTDSHYEHVCRRLCVYC*YH**CRH--SHSFKH 241
           +T + Y H CRR C +      CRH  SH+ +H
Sbjct: 81  RTQARYRHACRRTCRHA-----CRHACSHARRH 108


>SB_7018| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 425

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
 Frame = -1

Query: 435 YSF*DTPYIYNI----YTFLSSYIYFLYSFNRHYYV*PKTDSHY 316
           YS  D  Y Y+I    Y +  + +Y+ YS    YYV   TD +Y
Sbjct: 27  YSITDLYYAYSITNLYYAYSITDLYYAYSITDLYYVYSITDLYY 70


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,289,736
Number of Sequences: 59808
Number of extensions: 272402
Number of successful extensions: 538
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 520
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)