Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30975
         (460 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1281.03c |||DUF1077 family protein|Schizosaccharomyces pombe...    69   3e-13
SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ...    27   1.8  
SPBC31F10.05 |mug37||sequence orphan|Schizosaccharomyces pombe|c...    26   2.4  
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa...    25   7.3  
SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10 |Schizo...    24   9.7  
SPBC83.15 |||ribosome biogenesis protein Nsa1|Schizosaccharomyce...    24   9.7  

>SPCC1281.03c |||DUF1077 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 193

 Score = 69.3 bits (162), Expect = 3e-13
 Identities = 41/108 (37%), Positives = 60/108 (55%), Gaps = 8/108 (7%)
 Frame = +2

Query: 2   ALGPLKQVPMNLFIMYMAGNSISIFPIMMVGMLIVRPVKALFATQSTFKMVEGTQ----- 166
           A  PLKQ+PMN  + YM+GNS+ IF IM   ML+V P+KA+ +T S F   +GT      
Sbjct: 79  AYSPLKQIPMNAILAYMSGNSLQIFSIMTTLMLLVNPLKAITSTGSAFTPFKGTHPGTLW 138

Query: 167 -AIGQKIVYCIGNIVNILLALYKCQSMGLLQLT--QVIGWHLKSLKQD 301
            A+G    Y +  ++ + + +YK Q MGLL  T    + W +  +  D
Sbjct: 139 PAMG---AYILFQLLLMGIGVYKLQRMGLLPTTTSDWLAWEVSKVFMD 183


>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -3

Query: 275 NQSLE*VVTIPYSDTYRVLKECLLYFRYNKQFF 177
           NQS+     +PY  +      C L FR+  +FF
Sbjct: 259 NQSVYLTYDVPYGRSLYYYTSCALEFRFTNEFF 291


>SPBC31F10.05 |mug37||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 217

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 14/60 (23%), Positives = 31/60 (51%)
 Frame = -1

Query: 403 YNKYNSNCESFKLTFFPSN*IKFI*VINHLQYVRVLFEALQMPTNHLSEL*QSHTLTLIE 224
           + KY S CE   L   P+  I+ + +++H + +    + + + ++ L EL  ++ + L E
Sbjct: 159 FAKYYSCCEISPLLTKPATMIRVVGIVSHAEKI---LKVIHIASSDLDELWDTYNMVLYE 215


>SPAC22F8.07c |rtf1||replication termination factor
           Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = -1

Query: 193 TINNFLSDSLCTFNHFESTLCSKQRLHRPHY*HANHHYWKYRDRVTSHVHN 41
           T+N +L  +    +  + +L SK   +R    H +H  WKY   ++  +HN
Sbjct: 321 TVNQYLQSN--PSSPIQWSLISKNMRNR----HRHHCRWKYYTLISRDIHN 365


>SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +2

Query: 212 ILLALYKCQSMGLLQLTQVIGW 277
           +L++  K + +GL  L ++IGW
Sbjct: 260 VLMSAAKVKELGLKPLAKIIGW 281


>SPBC83.15 |||ribosome biogenesis protein Nsa1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -1

Query: 178 LSDSLCTFNHFESTLCSKQRLHRP 107
           LSD    F H ES+   K +LH P
Sbjct: 106 LSDGNLLFRHIESSKLRKLQLHGP 129


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,865,425
Number of Sequences: 5004
Number of extensions: 38568
Number of successful extensions: 101
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)