Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30975
         (460 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0022 - 13834090-13834128,13835217-13835282,13835364-138354...    42   2e-04
03_06_0737 + 35879723-35879990,35880105-35880201,35880464-358805...    32   0.25 
10_08_0373 - 17286104-17288839                                         31   0.45 
09_01_0106 + 1673737-1674522,1674625-1675089                           27   9.6  
07_03_1136 + 24218601-24218734,24218769-24219906                       27   9.6  
06_02_0034 - 10800691-10802215,10802294-10802828,10802902-10803397     27   9.6  

>03_03_0022 -
           13834090-13834128,13835217-13835282,13835364-13835461,
           13836340-13836493,13836742-13836798,13836906-13837028
          Length = 178

 Score = 42.3 bits (95), Expect = 2e-04
 Identities = 25/94 (26%), Positives = 48/94 (51%), Gaps = 2/94 (2%)
 Frame = +2

Query: 2   ALGPLKQVPMNLFIMYMAGNSISIFPIMMVGMLIVRPVKALFATQSTFKMVEG--TQAIG 175
           A  P K + M  F+M+MAG+++ +F I +    + +P+ AL +    F+  +      + 
Sbjct: 66  AQAPFKNLMMMGFMMWMAGSTVHLFSIGITFSALWQPISALRSVGKVFEPFKDPRVDTLA 125

Query: 176 QKIVYCIGNIVNILLALYKCQSMGLLQLTQVIGW 277
            K+V+   N+  + L ++K  ++GLL  T    W
Sbjct: 126 PKLVFIALNLAAMGLGVWKLNTLGLLP-TNASDW 158


>03_06_0737 +
           35879723-35879990,35880105-35880201,35880464-35880591,
           35880686-35880767,35880855-35880918,35880930-35881022,
           35881120-35881178,35881391-35881826,35882050-35882120,
           35882201-35882351
          Length = 482

 Score = 31.9 bits (69), Expect = 0.25
 Identities = 19/62 (30%), Positives = 30/62 (48%)
 Frame = +1

Query: 115 EGAVCYTKYFQNG*RYTSYRTKNCLLYRKYSKHSFSTL*VSEYGIVTTHSSDWLAFEEPQ 294
           EGAV Y KYF+       YR  + LL  K++ H+  T          +++   L+F+E +
Sbjct: 20  EGAVYYIKYFEVAEARPQYRPVDRLLMAKFTAHTTVTEDTGPPSTFPSYACKILSFDELR 79

Query: 295 TR 300
            R
Sbjct: 80  AR 81


>10_08_0373 - 17286104-17288839
          Length = 911

 Score = 31.1 bits (67), Expect = 0.45
 Identities = 16/66 (24%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
 Frame = -1

Query: 319  HLQYVRVLFEALQMPTNHLSEL*QSHTLTLIEC*KNVYYISDTINN--FLSDSLCTFNHF 146
            H + + + +  + +  + L  + ++  + + EC  ++ +IS  +N   F+SD  CT++HF
Sbjct: 843  HTERIALCYGLISVRVHDLIRISKNFRMCM-ECHSSIKFISRDMNREIFVSDG-CTYHHF 900

Query: 145  ESTLCS 128
            ++  CS
Sbjct: 901  QNGACS 906


>09_01_0106 + 1673737-1674522,1674625-1675089
          Length = 416

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = +2

Query: 227 YKCQSMG-LLQLTQVIGWHLKSLKQD 301
           Y+C+  G +    Q +GWH+KS   D
Sbjct: 309 YECRKCGTMFSSGQALGWHMKSHNSD 334


>07_03_1136 + 24218601-24218734,24218769-24219906
          Length = 423

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 11/33 (33%), Positives = 22/33 (66%)
 Frame = -1

Query: 310 YVRVLFEALQMPTNHLSEL*QSHTLTLIEC*KN 212
           Y+++L EALQ   NH+ E+    ++++++  KN
Sbjct: 5   YLQILDEALQQSANHIIEIYVHISISMVKWRKN 37


>06_02_0034 - 10800691-10802215,10802294-10802828,10802902-10803397
          Length = 851

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = +3

Query: 348 LLGKNVSLKDSQFELYLLYYYC 413
           L G ++ ++DSQ+  YL+++YC
Sbjct: 52  LAGDSI-IRDSQYRRYLMFFYC 72


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,932,202
Number of Sequences: 37544
Number of extensions: 208993
Number of successful extensions: 483
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)