Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30975
         (460 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39988| Best HMM Match : NAD_kinase (HMM E-Value=1.8)                29   1.8  
SB_17979| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.5  
SB_2892| Best HMM Match : RasGAP_C (HMM E-Value=0.83)                  27   9.9  

>SB_39988| Best HMM Match : NAD_kinase (HMM E-Value=1.8)
          Length = 581

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 154 NHFESTLCSKQRLHRPHY*HANHHYWKYRDRV 59
           +H+   LC  +R H  H+ H +HH+  Y D V
Sbjct: 231 HHYHHHLCHDRR-HHYHHVHYDHHHHHYHDIV 261


>SB_17979| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 315

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 20/68 (29%), Positives = 32/68 (47%)
 Frame = +2

Query: 137 STFKMVEGTQAIGQKIVYCIGNIVNILLALYKCQSMGLLQLTQVIGWHLKSLKQDSNILE 316
           ++F MV G    G    + +GNI + L  L + +  G  +  +V+  HLK       + E
Sbjct: 87  ASFVMVGGKLLFG----FILGNIASTLSNL-EMKQFGYRKKLEVVKHHLKKEMAPVELQE 141

Query: 317 VVYHLYEF 340
            V + YEF
Sbjct: 142 RVINFYEF 149


>SB_2892| Best HMM Match : RasGAP_C (HMM E-Value=0.83)
          Length = 333

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +3

Query: 117 RRCLLHKVLSKWLK 158
           R+CLLH+  +KWLK
Sbjct: 292 RKCLLHETEAKWLK 305


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,360,657
Number of Sequences: 59808
Number of extensions: 271711
Number of successful extensions: 702
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 691
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 932979724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)