Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30975
         (460 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006833-2|AAF60946.1|  174|Caenorhabditis elegans Hypothetical ...   105   2e-23
AL031627-17|CAA20950.2|  344|Caenorhabditis elegans Hypothetical...    29   1.2  
Z81489-1|CAB04005.2|  266|Caenorhabditis elegans Hypothetical pr...    29   1.6  
Z81030-4|CAB02708.1|   89|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>AC006833-2|AAF60946.1|  174|Caenorhabditis elegans Hypothetical
           protein ZK616.6 protein.
          Length = 174

 Score =  105 bits (251), Expect = 2e-23
 Identities = 51/91 (56%), Positives = 68/91 (74%), Gaps = 4/91 (4%)
 Frame = +2

Query: 2   ALGPLKQVPMNLFIMYMAGNSISIFPIMMVGMLIVRPVKALFATQSTFKMVE----GTQA 169
           A+GP K +PMN+F+MYMAG  +SIFPIMMVGM++ RP+KALFA  STFK +E    G+  
Sbjct: 61  AMGPAKSLPMNMFMMYMAGGGVSIFPIMMVGMMVFRPLKALFAVNSTFKPLESPATGSMF 120

Query: 170 IGQKIVYCIGNIVNILLALYKCQSMGLLQLT 262
           I  K+++C+GN+  I LA+YK  +MGLL  T
Sbjct: 121 I-HKLIFCLGNLGAIGLAIYKVHTMGLLPNT 150


>AL031627-17|CAA20950.2|  344|Caenorhabditis elegans Hypothetical
           protein Y102A5C.28 protein.
          Length = 344

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 17/68 (25%), Positives = 31/68 (45%)
 Frame = -2

Query: 216 RMFTIFPIQ*TIFCPIACVPSTILKVLCVANSAFTGLTINMPTIIIGNIEIELPAMYIIK 37
           ++F     Q T+   +  +P TIL   CV N  F   ++     +   I+  LP ++I+K
Sbjct: 244 QLFLALVCQATVPLILMHIPVTILYTCCVLNIVFNPFSVATTIALFPAID-PLPTIFIVK 302

Query: 36  RFMGTCFK 13
            +    F+
Sbjct: 303 NYRVALFE 310


>Z81489-1|CAB04005.2|  266|Caenorhabditis elegans Hypothetical
           protein C55A1.1 protein.
          Length = 266

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 16/61 (26%), Positives = 29/61 (47%)
 Frame = -2

Query: 219 KRMFTIFPIQ*TIFCPIACVPSTILKVLCVANSAFTGLTINMPTIIIGNIEIELPAMYII 40
           K++F     Q T+   +  +P T+L   CV N  F   ++     +   I+  LP ++I+
Sbjct: 206 KQLFVALVFQATVPLILMHIPVTVLYTCCVFNIVFDTFSVATTIALFPAID-PLPTIFIV 264

Query: 39  K 37
           K
Sbjct: 265 K 265


>Z81030-4|CAB02708.1|   89|Caenorhabditis elegans Hypothetical
           protein C01G10.6 protein.
          Length = 89

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 378 SQFELYLLYYYCKTNNKYVQT 440
           +Q + Y LYYY  TNN   QT
Sbjct: 15  AQAQAYYLYYYYPTNNNGYQT 35


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,149,703
Number of Sequences: 27780
Number of extensions: 210533
Number of successful extensions: 483
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 480
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 820565746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)