Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30975
         (460 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g10780.1 68418.m01253 expressed protein HSPC184, Homo sapiens...    44   4e-05
At4g37460.1 68417.m05302 tetratricopeptide repeat (TPR)-containi...    29   1.5  
At2g04020.1 68415.m00369 GDSL-motif lipase/hydrolase family prot...    29   2.0  
At2g04190.1 68415.m00404 meprin and TRAF homology domain-contain...    28   3.5  
At5g04690.1 68418.m00477 expressed protein                             27   6.1  
At4g17330.1 68417.m02600 agenet domain-containing protein contai...    27   6.1  
At1g79820.2 68414.m09323 hexose transporter, putative similar to...    27   6.1  
At1g79820.1 68414.m09322 hexose transporter, putative similar to...    27   6.1  
At4g19520.1 68417.m02872 disease resistance protein (TIR-NBS-LRR...    27   8.1  

>At5g10780.1 68418.m01253 expressed protein HSPC184, Homo sapiens,
           EMBL:AF151018
          Length = 180

 Score = 44.4 bits (100), Expect = 4e-05
 Identities = 26/94 (27%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
 Frame = +2

Query: 2   ALGPLKQVPMNLFIMYMAGNSISIFPIMMVGMLIVRPVKALFATQSTFKMVEG--TQAIG 175
           A  P K + M  F+M+MAGN++ +F I +    + +P+ AL +    F+  +    + + 
Sbjct: 68  AQSPFKNLMMMGFMMWMAGNTVHLFSIGITFSALWQPISALQSVGKIFEPFKDNKVELLM 127

Query: 176 QKIVYCIGNIVNILLALYKCQSMGLLQLTQVIGW 277
            K+V+   N+  + L ++K  ++GLL  T    W
Sbjct: 128 PKLVFLALNLGGLALGVWKLNTLGLLP-THASDW 160



 Score = 27.5 bits (58), Expect = 4.6
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 244 GIVTTHSSDWLAFEEPQTRLEH 309
           G++ TH+SDW++   P   +EH
Sbjct: 151 GLLPTHASDWVSSLPPPQEVEH 172


>At4g37460.1 68417.m05302 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515: TPR Domain
          Length = 883

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 278 HLKSLKQDSNILEVVYHLYEFNLVTREKC 364
           HLKS++ DSN LE   HL +F     + C
Sbjct: 456 HLKSIQLDSNYLEAWLHLAQFYQELADHC 484


>At2g04020.1 68415.m00369 GDSL-motif lipase/hydrolase family protein
           similar to family II lipase EXL6 (GI:15054390), EXL1
           (GI:15054382) [Arabidopsis thaliana]; contains Pfam
           profile PF00657: Lipase/Acylhydrolase with GDSL-like
           motif
          Length = 261

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +3

Query: 126 LLHKVLSKWLKVHKLSDKKLFI 191
           LLHK L K  K+HKL  +K FI
Sbjct: 204 LLHKFLKKIEKLHKLGARKFFI 225


>At2g04190.1 68415.m00404 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein similar to
           ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 411

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 10  PFETSTHESFYYVHGW*LYLYISNN 84
           P+E+S  E+ Y+ H W L LY++ N
Sbjct: 138 PYESSVFEA-YFEHKWRLILYVNGN 161


>At5g04690.1 68418.m00477 expressed protein
          Length = 625

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 4/75 (5%)
 Frame = -2

Query: 219 KRMFTIFPIQ*TIFCPIACVPSTILKVLCVANSAFTGLTINMPTIIIGNIE---IELPAM 49
           +R+F IF +   I C  AC    I   +  A  AF     ++P  +I  +    + + AM
Sbjct: 505 ERIFVIFIVSDLISCFAACTSVLIFLGILTARYAFDDFLFSLPANMIAGLSTLFVSIAAM 564

Query: 48  YI-IKRFMGTCFKGP 7
            +     + T F  P
Sbjct: 565 LVAFSSALFTIFNDP 579


>At4g17330.1 68417.m02600 agenet domain-containing protein contains
           Pfam PF05641: Agenet domain
          Length = 1058

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 85  HYWKYRDRVTSHVHNKKIHGYLFQR 11
           H WK  DRV S VH+  + G + ++
Sbjct: 683 HIWKIGDRVDSWVHDSWLEGVITEK 707


>At1g79820.2 68414.m09323 hexose transporter, putative similar to
           hexose transporter GI:8347246 from (Solanum tuberosum);
           contains Pfam profile PF00083: major facilitator
           superfamily protein
          Length = 495

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = +2

Query: 89  VGMLIVRPVKALFATQSTFKMVEGTQAIGQKIVYCIGNIVNILLALYKCQSMG 247
           +GM I   V AL+ T+ +   V GT     +I  CIG + ++   +    ++G
Sbjct: 158 IGMGIGPSVTALYVTEVSPAYVRGTYGSSTQIATCIGLLGSLFAGIPAKDNLG 210


>At1g79820.1 68414.m09322 hexose transporter, putative similar to
           hexose transporter GI:8347246 from (Solanum tuberosum);
           contains Pfam profile PF00083: major facilitator
           superfamily protein
          Length = 495

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = +2

Query: 89  VGMLIVRPVKALFATQSTFKMVEGTQAIGQKIVYCIGNIVNILLALYKCQSMG 247
           +GM I   V AL+ T+ +   V GT     +I  CIG + ++   +    ++G
Sbjct: 158 IGMGIGPSVTALYVTEVSPAYVRGTYGSSTQIATCIGLLGSLFAGIPAKDNLG 210


>At4g19520.1 68417.m02872 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1129

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +2

Query: 14  LKQVPMNLFIMYMAGNSISIFPIMMVGML 100
           +K++P NL  +Y+AG ++  FP  ++  L
Sbjct: 819 IKELPRNLKELYLAGTAVKEFPSTLLETL 847


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,268,518
Number of Sequences: 28952
Number of extensions: 184042
Number of successful extensions: 457
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 454
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 762235320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)