Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30974
         (694 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.6  
SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch...    25   7.9  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    25   7.9  
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc...    25   7.9  

>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 331

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = -1

Query: 658 YYHKIQINR-PGLPIPNWTIQNIVRHGPIAHVNQMPHSPKNFQVNSYNVRIKLSLTRNVF 482
           Y  K+Q NR  G  +P W    +      AH +   +   N  +NS+N +  L+  RN  
Sbjct: 230 YTAKVQFNRLSGKFMPKWASPELRSEENKAHKHMEQYFDINSSLNSHNGQSLLAERRNKR 289

Query: 481 Y 479
           Y
Sbjct: 290 Y 290


>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 221

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +1

Query: 310 SFLTSAEGHPFGVIRINL*LKC 375
           SF      HPF V+RIN  L C
Sbjct: 84  SFHLRVRAHPFHVVRINKMLSC 105


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/29 (34%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +2

Query: 485 YISCE-AQFYSNIIRVYLKVFWRMWHLIN 568
           Y  C  + FY+++  + L VF R+++L+N
Sbjct: 182 YFQCSYSVFYASVFYILLGVFIRVFYLVN 210


>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 221

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +1

Query: 310 SFLTSAEGHPFGVIRINL*LKC 375
           SF      HPF V+RIN  L C
Sbjct: 84  SFHLRVRAHPFHVVRINKMLSC 105


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,609,532
Number of Sequences: 5004
Number of extensions: 52459
Number of successful extensions: 96
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)