Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30974
         (694 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0175 - 1413599-1413934,1414326-1414526,1414660-1414962           29   3.5  
01_06_0192 + 27347369-27348826,27349124-27349264,27349350-273510...    29   4.6  

>03_01_0175 - 1413599-1413934,1414326-1414526,1414660-1414962
          Length = 279

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
 Frame = +1

Query: 193 YNNIH*I--VEKSIINCSFRSEAGGSQ 267
           Y N+H +  VEK ++NC   +EAG S+
Sbjct: 96  YTNVHQVPKVEKIVVNCGLGAEAGNSK 122


>01_06_0192 + 27347369-27348826,27349124-27349264,27349350-27351081,
            27353739-27354606,27354784-27355957
          Length = 1790

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 10/37 (27%), Positives = 23/37 (62%)
 Frame = +3

Query: 339  LRCYKNQFIIKM*FCNENKLVFKLIISKIKTEVLESR 449
            L  Y+  +   +  C+E + V +L++ +++T++LE R
Sbjct: 1336 LLAYRGAYASVLEICSEVRKVLELLVGQVRTKILEKR 1372


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,985,687
Number of Sequences: 37544
Number of extensions: 268678
Number of successful extensions: 456
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)