Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30974
         (694 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    23   3.6  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   3.6  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    22   6.4  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    22   6.4  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    22   6.4  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    22   6.4  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   8.4  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   8.4  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    21   8.4  

>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -1

Query: 289 PIFF*N*LVTRPLRFGNCNLLLISPLFNGCYY 194
           P+FF    + + L  G   +  I+PLF G  Y
Sbjct: 33  PMFFMELALGQMLTVGGLGVFKIAPLFKGIGY 64


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 625 LPIPNWTIQNIVRHGPIAHVNQ 560
           +P P   I+NI ++G ++H NQ
Sbjct: 652 IPEPQ-DIENIFKYGYVSHANQ 672


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -1

Query: 664 HIYYHKIQINRPGLPIPNWTIQNIVRHGPI 575
           +IY+  +     GL +P+WT  NI   G +
Sbjct: 176 YIYHTLVAEQSYGLTLPSWT-NNIFPRGEL 204


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -1

Query: 664 HIYYHKIQINRPGLPIPNWTIQNIVRHGPI 575
           +IY+  +     GL +P+WT  NI   G +
Sbjct: 191 YIYHTLVAEQSYGLTLPSWT-NNIFPRGEL 219


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -1

Query: 679 NLKSNHIYYHKIQINRPGLPIP 614
           N  S  +YY+ I I +  +P+P
Sbjct: 317 NYNSKKLYYNIINIEQIPVPVP 338


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -1

Query: 679 NLKSNHIYYHKIQINRPGLPIP 614
           N  S  +YY+ I I +  +P+P
Sbjct: 328 NYNSKKLYYNIINIEQIPVPVP 349


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +1

Query: 583 HVALYFGWSNLVWADLVYL 639
           H ++  GWS  +   LVY+
Sbjct: 392 HTSVLIGWSAFLCISLVYI 410


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +2

Query: 512 SNIIRVYLKVFWRMWHLINMCDWSMSHYILDGPIWYGQTWSIY 640
           +N  R+ +K+  R+  LI   D ++ + I+   +W  Q W+ Y
Sbjct: 41  NNSDRLTVKMGLRLSQLI---DVNLKNQIMTTNVWVEQEWNDY 80


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -1

Query: 664 HIYYHKIQINRPGLPIPNWTIQNIVRHGPI 575
           +IY+  +     GL +P+WT  NI   G +
Sbjct: 79  YIYHTLVAEQSYGLTLPSWT-NNIFPKGEL 107


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,991
Number of Sequences: 438
Number of extensions: 3966
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)