Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30973X
         (484 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP31B10.08c |rpl35a|rpl33|60S ribosomal protein L35a|Schizosac...    73   3e-14
SPBC1921.01c |rpl3701|rpl37-1, rpl37|60S ribosomal protein L37|S...    70   2e-13
SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz...    25   7.9  

>SPCP31B10.08c |rpl35a|rpl33|60S ribosomal protein
           L35a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 108

 Score = 72.5 bits (170), Expect = 3e-14
 Identities = 36/69 (52%), Positives = 45/69 (65%)
 Frame = +2

Query: 257 KHCVYVYRAKKRTPIPGGPRGKFTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRI 436
           K   YVY++ K        RG  +K+R IWG + RPHGNSG+VRA+F  NLPA+  G  +
Sbjct: 48  KRVCYVYKSSKAV------RG--SKIRVIWGTIARPHGNSGAVRARFVHNLPAKTFGSSL 99

Query: 437 RVMLYPSRI 463
           RVMLYPS I
Sbjct: 100 RVMLYPSNI 108



 Score = 31.1 bits (67), Expect = 0.091
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +3

Query: 123 PRHG-RLYAKAVLTGYKPGLRNQHENTALLKVEGAKDRNDAVFY 251
           P  G RLY KA    ++      H  T+++K+EG   + +A FY
Sbjct: 2   PAQGHRLYVKAKHLSFQRSKHVIHPGTSIVKIEGCDSKEEAQFY 45


>SPBC1921.01c |rpl3701|rpl37-1, rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 108

 Score = 69.7 bits (163), Expect = 2e-13
 Identities = 34/69 (49%), Positives = 45/69 (65%)
 Frame = +2

Query: 257 KHCVYVYRAKKRTPIPGGPRGKFTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRI 436
           K   +VY++ K  P+ G      +K+R IWG V+RPHGNSG VRA+F  NLP +  G  +
Sbjct: 48  KRICFVYKSNK--PVRG------SKIRVIWGTVSRPHGNSGVVRARFTHNLPPKTFGASL 99

Query: 437 RVMLYPSRI 463
           RVMLYPS +
Sbjct: 100 RVMLYPSNV 108



 Score = 31.9 bits (69), Expect = 0.052
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +3

Query: 123 PRHG-RLYAKAVLTGYKPGLRNQHENTALLKVEGAKDRNDAVFY 251
           P  G RLY KA    ++      H  T+L+K+EG   + +A FY
Sbjct: 2   PAQGHRLYVKAKHLSFQRSKHVIHPGTSLVKIEGCDSKEEAQFY 45


>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1473

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = +3

Query: 357 PAHMATLAVSEPSSSLTSLPRLWDTEY 437
           P     L V EP   +TSLPR WD  Y
Sbjct: 308 PTSTKRLTVLEP---ITSLPRKWDPLY 331


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,899,690
Number of Sequences: 5004
Number of extensions: 38095
Number of successful extensions: 97
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)