Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30973X
(484 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0995 + 33377933-33378000,33378099-33378327,33378410-33378451 85 4e-17
05_07_0061 + 27420442-27420506,27420619-27420847,27420968-27421009 77 6e-15
05_07_0069 + 27475072-27475136,27475237-27475465,27475532-274756... 60 7e-10
12_01_0899 - 8689125-8689383,8689540-8689826 30 1.1
12_01_0819 + 7545656-7546006,7546087-7546162,7547196-7547401,754... 29 1.5
09_04_0201 + 15543318-15543488,15543956-15544069 29 1.5
08_02_0772 + 21035762-21037567 29 2.0
07_03_0529 - 19107949-19108152,19108857-19109147,19109817-191099... 29 2.0
10_01_0318 + 3493913-3496976,3497064-3497392 29 2.6
06_03_0559 + 22148773-22149210,22149478-22149684,22150065-221504... 28 3.4
06_01_0270 - 2001569-2001589,2001852-2001980,2002966-2003055,200... 28 3.4
02_01_0473 - 3403547-3404241,3404455-3404983,3405299-3405477,340... 28 4.5
11_04_0142 + 14027726-14029081 27 6.0
12_01_0503 - 3981603-3981730,3982858-3983023,3983057-3983139,398... 27 7.9
09_04_0222 + 15825878-15826451,15826542-15827017 27 7.9
>02_05_0995 + 33377933-33378000,33378099-33378327,33378410-33378451
Length = 112
Score = 84.6 bits (200), Expect = 4e-17
Identities = 42/71 (59%), Positives = 49/71 (69%)
Frame = +2
Query: 251 CCKHCVYVYRAKKRTPIPGGPRGKFTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGH 430
C K YVY+AK ++ GG T R IWGKVTRPHGNSG VRAKFKSNLP +MG
Sbjct: 50 CGKRMAYVYKAKTKS---GG-----TNYRCIWGKVTRPHGNSGVVRAKFKSNLPPASMGR 101
Query: 431 RIRVMLYPSRI 463
++RV +YPS I
Sbjct: 102 KVRVFMYPSSI 112
Score = 41.5 bits (93), Expect = 3e-04
Identities = 15/39 (38%), Positives = 25/39 (64%)
Frame = +3
Query: 135 RLYAKAVLTGYKPGLRNQHENTALLKVEGAKDRNDAVFY 251
RLY + + GYK NQ+ENT+L+++EG + + +Y
Sbjct: 11 RLYVRGTILGYKRSKSNQYENTSLVQIEGVNTKEEVAWY 49
>05_07_0061 + 27420442-27420506,27420619-27420847,27420968-27421009
Length = 111
Score = 77.4 bits (182), Expect = 6e-15
Identities = 37/69 (53%), Positives = 47/69 (68%)
Frame = +2
Query: 257 KHCVYVYRAKKRTPIPGGPRGKFTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRI 436
K YVY+AK ++ + +R IWGKVTRPHGNSG VRAKF+SNLP +MG ++
Sbjct: 51 KRIAYVYKAKTKS--------NDSTIRCIWGKVTRPHGNSGVVRAKFRSNLPPTSMGKKV 102
Query: 437 RVMLYPSRI 463
RV +YPS I
Sbjct: 103 RVFMYPSSI 111
Score = 45.2 bits (102), Expect = 3e-05
Identities = 19/48 (39%), Positives = 29/48 (60%)
Frame = +3
Query: 111 KASQPRHGRLYAKAVLTGYKPGLRNQHENTALLKVEGAKDRNDAVFYA 254
K Q + RLY + + GYK NQ+ENT+LL++EG + + +YA
Sbjct: 2 KGRQGQRVRLYVRGTILGYKRSKSNQYENTSLLQIEGVNTKEEVGWYA 49
>05_07_0069 +
27475072-27475136,27475237-27475465,27475532-27475630,
27476172-27476287,27476670-27476757
Length = 198
Score = 60.5 bits (140), Expect = 7e-10
Identities = 30/56 (53%), Positives = 37/56 (66%)
Frame = +2
Query: 257 KHCVYVYRAKKRTPIPGGPRGKFTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAM 424
K YVY+AK ++ + +R IWGKVTRPHGNSG VRAKF+SNLP +M
Sbjct: 51 KRIAYVYKAKTKS--------NDSTIRCIWGKVTRPHGNSGVVRAKFRSNLPPTSM 98
Score = 45.2 bits (102), Expect = 3e-05
Identities = 19/48 (39%), Positives = 29/48 (60%)
Frame = +3
Query: 111 KASQPRHGRLYAKAVLTGYKPGLRNQHENTALLKVEGAKDRNDAVFYA 254
K Q + RLY + + GYK NQ+ENT+LL++EG + + +YA
Sbjct: 2 KGRQGQRVRLYVRGTILGYKRSKSNQYENTSLLQIEGVNTKEEVGWYA 49
>12_01_0899 - 8689125-8689383,8689540-8689826
Length = 181
Score = 29.9 bits (64), Expect = 1.1
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = -2
Query: 438 RILCPIAWAGRLDLNLART-LPELPCGRVTLPQIARSLVNLPRGPP 304
R+L P + A R + AR LPE PC R+ LP+ + LP PP
Sbjct: 17 RLLLPASGAARGAV--ARLPLPEPPCARLLLPEPPWGMAALPPEPP 60
>12_01_0819 +
7545656-7546006,7546087-7546162,7547196-7547401,
7547498-7547584,7547673-7547765,7548172-7548326,
7548470-7548554,7548632-7548718,7548801-7548920,
7549707-7549808,7549903-7550070
Length = 509
Score = 29.5 bits (63), Expect = 1.5
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = -1
Query: 292 PLLSSVHIDAMLAA*KTASLRSFAPSTLRRAVFSCWLRRPGLYPVSTA 149
P L + H D +L + A+ + ST FS WLR GL P A
Sbjct: 43 PRLVACHADTLLPSSSPAAAAAACASTASANGFSDWLREHGLPPGKVA 90
>09_04_0201 + 15543318-15543488,15543956-15544069
Length = 94
Score = 29.5 bits (63), Expect = 1.5
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -2
Query: 363 GRVTLPQIARSLVNLPRGPPGIGVLFL 283
GR+ PQ + S V PRG PG+ VL L
Sbjct: 6 GRLPRPQGSSSAVPRPRGLPGVSVLLL 32
>08_02_0772 + 21035762-21037567
Length = 601
Score = 29.1 bits (62), Expect = 2.0
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = -2
Query: 243 LHHYGLLLLQP*GERCSRAGCVDQAYIL*VRPLRTA 136
+HHYG ++ + RAG +DQAY L V+ +R A
Sbjct: 365 VHHYGCMV-----DLMGRAGLLDQAYELVVKDMRVA 395
>07_03_0529 -
19107949-19108152,19108857-19109147,19109817-19109939,
19110019-19110306
Length = 301
Score = 29.1 bits (62), Expect = 2.0
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = -1
Query: 457 GRIQHHSYSVSHSLGREVRLE 395
GR+ HHS+ VS L R VRLE
Sbjct: 124 GRVLHHSFPVSLFLPRNVRLE 144
>10_01_0318 + 3493913-3496976,3497064-3497392
Length = 1130
Score = 28.7 bits (61), Expect = 2.6
Identities = 22/70 (31%), Positives = 36/70 (51%)
Frame = -2
Query: 480 LAEGS*ILEGYSITRILCPIAWAGRLDLNLARTLPELPCGRVTLPQIARSLVNLPRGPPG 301
LA GS +LE LC + +G + LA LPEL ++ ++ + P PP
Sbjct: 172 LAAGSSVLEYLD----LCVNSLSGAIPPELAAALPELTYLDLSSNNLSGPM---PEFPPR 224
Query: 300 IGVLFLALYT 271
G+++L+LY+
Sbjct: 225 CGLVYLSLYS 234
>06_03_0559 +
22148773-22149210,22149478-22149684,22150065-22150471,
22150655-22151472,22151564-22151674,22151846-22152015
Length = 716
Score = 28.3 bits (60), Expect = 3.4
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 6/68 (8%)
Frame = +3
Query: 117 SQPRHGRLYAKAVLTGYKPGLRNQHENTAL------LKVEGAKDRNDAVFYAASIASMCT 278
S R GR+ ++ PG R+Q NTA+ V+G DR V+ + +
Sbjct: 118 SSGRGGRVRQRSSSATAAPGRRSQRSNTAMSGEGYQAIVDGLLDRRGLVYTRCQVKNQIL 177
Query: 279 ELRRGHQF 302
L+ H F
Sbjct: 178 VLKTTHSF 185
>06_01_0270 -
2001569-2001589,2001852-2001980,2002966-2003055,
2003361-2003466,2003985-2004064,2005895-2005977,
2006057-2006126,2006208-2006291,2006445-2006540,
2007555-2007635,2007844-2007999
Length = 331
Score = 28.3 bits (60), Expect = 3.4
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +2
Query: 299 IPGGPRGKFTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRI 436
+P GP F + I K + HGN S + + N +GHR+
Sbjct: 170 LPAGPTAHFKLSKLILRKDIKNHGNPTSHKPELVLNNFTTRLGHRV 215
>02_01_0473 -
3403547-3404241,3404455-3404983,3405299-3405477,
3405868-3405952,3406136-3406482,3407061-3407159,
3408135-3408636
Length = 811
Score = 27.9 bits (59), Expect = 4.5
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 111 KASQPRHGRLYAKAVLTGYKPGLRNQ 188
K + R GR++ AVL +PGLR +
Sbjct: 125 KGREEREGRMHLDAVLAARRPGLRRE 150
>11_04_0142 + 14027726-14029081
Length = 451
Score = 27.5 bits (58), Expect = 6.0
Identities = 16/53 (30%), Positives = 30/53 (56%)
Frame = -1
Query: 334 QLGKFATGTSGNWCPLLSSVHIDAMLAA*KTASLRSFAPSTLRRAVFSCWLRR 176
+L AT + + P+L++ + A++A A+ + A ST+ R VF+C + R
Sbjct: 71 RLDNAATAPAPSAGPVLTTSNGSAIVAIASAAAAAAAAASTMAREVFACRICR 123
>12_01_0503 - 3981603-3981730,3982858-3983023,3983057-3983139,
3983250-3983301,3983497-3983654,3983756-3985617,
3986029-3986093,3986176-3986340,3986836-3986893,
3987479-3987590,3987661-3987712,3988080-3988140,
3988220-3988377,3988705-3988787,3988897-3988945,
3989122-3989185,3990225-3990317,3990410-3990543,
3991364-3991585,3991815-3991937,3992103-3992267,
3993064-3993450
Length = 1479
Score = 27.1 bits (57), Expect = 7.9
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +3
Query: 315 VANLPSCVLSGAR*PAHMATLAVSEP--SSSLTSLPRLWDTEYE*C 446
+A+ P+CVL G + T + ++ SSS+ RLWDT + C
Sbjct: 1230 LADQPACVLEGHQDDVLDLTWSKTDQLLSSSMDKTVRLWDTTTKAC 1275
>09_04_0222 + 15825878-15826451,15826542-15827017
Length = 349
Score = 27.1 bits (57), Expect = 7.9
Identities = 22/71 (30%), Positives = 28/71 (39%), Gaps = 1/71 (1%)
Frame = -2
Query: 438 RILCPIAWAGRLDLNLARTLPELPCGRVTLP-QIARSLVNLPRGPPGIGVLFLALYT*TQ 262
R+L P++ A R LPE PC R+ LP Q + LP P G L
Sbjct: 17 RLLLPVSGAAR-GAAARLPLPEPPCTRLPLPEQPWGTAARLPLSEPSWGTAALPPEPPWG 75
Query: 261 CLQHKRLHHYG 229
H H+G
Sbjct: 76 AAAHPPAPHWG 86
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,961,095
Number of Sequences: 37544
Number of extensions: 315402
Number of successful extensions: 918
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 918
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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