Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30973X
         (484 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18396| Best HMM Match : Ribosomal_L35Ae (HMM E-Value=0)             77   6e-15
SB_21444| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.0  
SB_35470| Best HMM Match : PAN (HMM E-Value=2.9e-08)                   29   2.7  
SB_53527| Best HMM Match : zf-C3HC4 (HMM E-Value=3.3e-12)              28   4.6  
SB_27649| Best HMM Match : ResIII (HMM E-Value=0.43)                   27   8.1  
SB_41929| Best HMM Match : ResIII (HMM E-Value=1.5)                    27   8.1  

>SB_18396| Best HMM Match : Ribosomal_L35Ae (HMM E-Value=0)
          Length = 115

 Score = 77.4 bits (182), Expect = 6e-15
 Identities = 38/63 (60%), Positives = 44/63 (69%)
 Frame = +2

Query: 257 KHCVYVYRAKKRTPIPGGPRGKFTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRI 436
           K   +VYRAK +T   G    K TKLR IWGKVTR HGNSG VRAKF+ NLP +AMG  +
Sbjct: 47  KRLAFVYRAKNKTVAKGDK--KATKLRVIWGKVTRAHGNSGVVRAKFRHNLPPKAMGATV 104

Query: 437 RVM 445
           RV+
Sbjct: 105 RVI 107



 Score = 53.6 bits (123), Expect = 8e-08
 Identities = 21/39 (53%), Positives = 29/39 (74%)
 Frame = +3

Query: 135 RLYAKAVLTGYKPGLRNQHENTALLKVEGAKDRNDAVFY 251
           RLY K ++ G+K GLRNQH NT+L+K+EG  +R +  FY
Sbjct: 6   RLYTKGIVLGFKRGLRNQHPNTSLVKIEGVDERKNTEFY 44


>SB_21444| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 333

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -2

Query: 411 GRLDLNLARTLPELPCGRVTLPQI 340
           G  DLN+ +T+P + C R+  P++
Sbjct: 257 GLFDLNIGQTIPSVTCRRIPFPEL 280


>SB_35470| Best HMM Match : PAN (HMM E-Value=2.9e-08)
          Length = 614

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
 Frame = -1

Query: 400 LELGSDTARVAMWAG----HLAPDSTQLGKFATGTSGNWC 293
           L L   TA + +W G    HLA D   +  FATG S  WC
Sbjct: 12  LALRQPTASLNIWEGRAPPHLAVDGVNMSTFATG-STIWC 50


>SB_53527| Best HMM Match : zf-C3HC4 (HMM E-Value=3.3e-12)
          Length = 1290

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +2

Query: 296  PIPGGPRGKFTKLRAIWGKVTRPHGNSGSVRAKFKSNLPA 415
            PIP G +GKF       G+V   H + G V A  + ++ A
Sbjct: 1114 PIPTGTKGKFIPSTGHKGQVHPIHWHKGHVTASLEEDMDA 1153


>SB_27649| Best HMM Match : ResIII (HMM E-Value=0.43)
          Length = 802

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +3

Query: 138 LYAKAVLTGYKPGLRNQHENTALLKVEGAKDRNDAVFYAASIASMCTE 281
           +YAKAV +G KPG RN        K  G + R +A +      S+  E
Sbjct: 554 IYAKAVPSGGKPGERNPRYGEWRHKKPGYEWRPEAAWGPKKSGSLAKE 601


>SB_41929| Best HMM Match : ResIII (HMM E-Value=1.5)
          Length = 773

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +3

Query: 138 LYAKAVLTGYKPGLRNQHENTALLKVEGAKDRNDAVFYAASIASMCTE 281
           +YAKAV +G KPG RN        K  G + R +A +      S+  E
Sbjct: 525 IYAKAVPSGGKPGERNPRYGEWRHKKPGYEWRPEAAWGPKKSGSLAKE 572


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,328,738
Number of Sequences: 59808
Number of extensions: 333940
Number of successful extensions: 859
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1013948003
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)