Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30973X
(484 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41264-2|AAA82422.1| 124|Caenorhabditis elegans Ribosomal prote... 83 8e-17
AC006708-12|AAT81173.1| 908|Caenorhabditis elegans Hypothetical... 29 1.8
AC006708-11|AAF60426.2| 1019|Caenorhabditis elegans Hypothetical... 29 1.8
Z49207-6|CAJ58500.1| 348|Caenorhabditis elegans Hypothetical pr... 27 5.4
Z49207-5|CAA89070.1| 402|Caenorhabditis elegans Hypothetical pr... 27 5.4
Z35719-1|CAA84800.1| 296|Caenorhabditis elegans Hypothetical pr... 27 5.4
Z19158-6|CAA79575.2| 615|Caenorhabditis elegans Hypothetical pr... 27 9.4
Z19156-3|CAA79564.2| 615|Caenorhabditis elegans Hypothetical pr... 27 9.4
AF079899-1|AAC83661.1| 615|Caenorhabditis elegans sodium- and c... 27 9.4
>U41264-2|AAA82422.1| 124|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 33 protein.
Length = 124
Score = 83.4 bits (197), Expect = 8e-17
Identities = 39/69 (56%), Positives = 49/69 (71%)
Frame = +2
Query: 257 KHCVYVYRAKKRTPIPGGPRGKFTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRI 436
K VY+Y+A +T G T+ RAIWGK+TRPHGN+G+VRAKF N+P A+G RI
Sbjct: 58 KRVVYLYKAHNKTLKTGHTVA--TRTRAIWGKITRPHGNAGAVRAKFHHNIPPSALGKRI 115
Query: 437 RVMLYPSRI 463
RV+LYPS I
Sbjct: 116 RVLLYPSNI 124
Score = 63.3 bits (147), Expect = 9e-11
Identities = 29/51 (56%), Positives = 37/51 (72%)
Frame = +3
Query: 102 VLRKASQPRHGRLYAKAVLTGYKPGLRNQHENTALLKVEGAKDRNDAVFYA 254
V R+ S P GRLY KA+ TG+K GLR Q E+T+LLK+EG ++ DA FYA
Sbjct: 6 VARRPSAPTTGRLYVKAIFTGFKRGLRTQSEHTSLLKLEGVFNKEDAGFYA 56
>AC006708-12|AAT81173.1| 908|Caenorhabditis elegans Hypothetical
protein Y110A7A.9b protein.
Length = 908
Score = 29.1 bits (62), Expect = 1.8
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = -1
Query: 403 RLELGSDTARVAMWAGHLAPDSTQLGKFATGTSGNWCPLLSSV-HIDAMLA 254
++ L T + W GHLA ++ Q+ A + NW ++ + DA+LA
Sbjct: 839 KMGLDDPTEVESKWIGHLADEAKQIRVLAEASRRNWPDVVEATSSADAILA 889
>AC006708-11|AAF60426.2| 1019|Caenorhabditis elegans Hypothetical
protein Y110A7A.9a protein.
Length = 1019
Score = 29.1 bits (62), Expect = 1.8
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = -1
Query: 403 RLELGSDTARVAMWAGHLAPDSTQLGKFATGTSGNWCPLLSSV-HIDAMLA 254
++ L T + W GHLA ++ Q+ A + NW ++ + DA+LA
Sbjct: 950 KMGLDDPTEVESKWIGHLADEAKQIRVLAEASRRNWPDVVEATSSADAILA 1000
>Z49207-6|CAJ58500.1| 348|Caenorhabditis elegans Hypothetical
protein R07E3.1b protein.
Length = 348
Score = 27.5 bits (58), Expect = 5.4
Identities = 18/45 (40%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Frame = -3
Query: 386 GHCQSCHVGGSPCPR*HAAW*ICHGDLRELVSSS*L-CTHRRNAC 255
G C SC S AAW I HG+ R L + L C NAC
Sbjct: 151 GQCGSCWAFASTATV-EAAWAIAHGEKRNLSEQTLLDCDLVDNAC 194
>Z49207-5|CAA89070.1| 402|Caenorhabditis elegans Hypothetical
protein R07E3.1a protein.
Length = 402
Score = 27.5 bits (58), Expect = 5.4
Identities = 18/45 (40%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Frame = -3
Query: 386 GHCQSCHVGGSPCPR*HAAW*ICHGDLRELVSSS*L-CTHRRNAC 255
G C SC S AAW I HG+ R L + L C NAC
Sbjct: 205 GQCGSCWAFASTATV-EAAWAIAHGEKRNLSEQTLLDCDLVDNAC 248
>Z35719-1|CAA84800.1| 296|Caenorhabditis elegans Hypothetical
protein F17C8.2 protein.
Length = 296
Score = 27.5 bits (58), Expect = 5.4
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -2
Query: 462 ILEGYSITRILCPIAWAGRLDLNLARTLPELP 367
+L+G S+ RI AW +D+ + T P P
Sbjct: 38 VLDGVSVFRIETDAAWTDMMDIQITVTPPSKP 69
>Z19158-6|CAA79575.2| 615|Caenorhabditis elegans Hypothetical
protein T23G5.5 protein.
Length = 615
Score = 26.6 bits (56), Expect = 9.4
Identities = 8/19 (42%), Positives = 15/19 (78%)
Frame = -1
Query: 172 GLYPVSTAFAYSLPWRGCD 116
GL+ + T+F+++LPW C+
Sbjct: 144 GLHYLYTSFSFNLPWASCN 162
>Z19156-3|CAA79564.2| 615|Caenorhabditis elegans Hypothetical
protein T23G5.5 protein.
Length = 615
Score = 26.6 bits (56), Expect = 9.4
Identities = 8/19 (42%), Positives = 15/19 (78%)
Frame = -1
Query: 172 GLYPVSTAFAYSLPWRGCD 116
GL+ + T+F+++LPW C+
Sbjct: 144 GLHYLYTSFSFNLPWASCN 162
>AF079899-1|AAC83661.1| 615|Caenorhabditis elegans sodium- and
chloride-dependentantidepressant- and cocaine-sensitive
dopamine transporterprotein.
Length = 615
Score = 26.6 bits (56), Expect = 9.4
Identities = 8/19 (42%), Positives = 15/19 (78%)
Frame = -1
Query: 172 GLYPVSTAFAYSLPWRGCD 116
GL+ + T+F+++LPW C+
Sbjct: 144 GLHYLYTSFSFNLPWASCN 162
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,834,008
Number of Sequences: 27780
Number of extensions: 233229
Number of successful extensions: 516
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 516
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 892829112
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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