Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30973X
         (484 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    25   0.42 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   3.0  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   3.0  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   3.0  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    21   5.2  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   9.1  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 25.0 bits (52), Expect = 0.42
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -2

Query: 129 GGAVMLCEGPLWAPQELLEQPWPLFLW 49
           G  VM+C  P+W       QPW  F W
Sbjct: 542 GPLVMVCSAPVWR-----FQPWGPFTW 563


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +2

Query: 95   HKGPSQSITAPPRQAVRKGRTHR 163
            H  P++    PPR    +G +HR
Sbjct: 1694 HCAPNRRCPPPPRMGSAEGLSHR 1716


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 302 PGGPRGKFTKLRAIWGKVTRP 364
           PG PR  FTKL+    +  RP
Sbjct: 142 PGTPRINFTKLKRHHPRYKRP 162


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -3

Query: 371 CHVGGSPCPR 342
           CHV G P PR
Sbjct: 423 CHVAGEPLPR 432


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = -2

Query: 303 GIGVLFLALY 274
           GI VLFLALY
Sbjct: 10  GIAVLFLALY 19


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 12/45 (26%), Positives = 19/45 (42%)
 Frame = +3

Query: 180 RNQHENTALLKVEGAKDRNDAVFYAASIASMCTELRRGHQFPEVP 314
           R+ H N  +        ++D   Y   I  +  ELR+ HQ  + P
Sbjct: 584 RSIHNNYPVHTFGRLTSKHDNSLYDEYIPFLERELRKAHQEKDSP 628


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,019
Number of Sequences: 438
Number of extensions: 2793
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13174803
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)