Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30973X
(484 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g74270.1 68414.m08601 60S ribosomal protein L35a (RPL35aC) si... 76 1e-14
At1g07070.1 68414.m00753 60S ribosomal protein L35a (RPL35aA) si... 76 1e-14
At3g55750.1 68416.m06194 60S ribosomal protein L35a (RPL35aD) ri... 75 3e-14
At1g41880.1 68414.m04836 60S ribosomal protein L35a (RPL35aB) id... 75 3e-14
At1g21660.1 68414.m02711 expressed protein low similarity to SP|... 28 2.9
At2g04350.2 68415.m00434 long-chain-fatty-acid--CoA ligase famil... 27 8.8
At2g04350.1 68415.m00433 long-chain-fatty-acid--CoA ligase famil... 27 8.8
At1g75160.1 68414.m08730 expressed protein contains Pfam profile... 27 8.8
At1g25375.1 68414.m03149 metallo-beta-lactamase family protein 27 8.8
>At1g74270.1 68414.m08601 60S ribosomal protein L35a (RPL35aC)
similar to ribosomal protein L33B GB:NP_014877 from
[Saccharomyces cerevisiae]
Length = 112
Score = 76.2 bits (179), Expect = 1e-14
Identities = 37/69 (53%), Positives = 45/69 (65%)
Frame = +2
Query: 257 KHCVYVYRAKKRTPIPGGPRGKFTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRI 436
K Y+Y+AK + + R IWGKVTRPHGNSG VRAKF SNLP ++MG R+
Sbjct: 52 KRMAYIYKAKTKK--------NGSHYRCIWGKVTRPHGNSGVVRAKFTSNLPPKSMGSRV 103
Query: 437 RVMLYPSRI 463
RV +YPS I
Sbjct: 104 RVFMYPSNI 112
Score = 39.1 bits (87), Expect = 0.002
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +3
Query: 111 KASQPRHGRLYAKAVLTGYKPGLRNQHENTALLKVEGAKDRNDAVFY 251
K Q RLY + + GYK NQ+ NT+L+++EG + + +Y
Sbjct: 3 KGRQGERVRLYVRGTILGYKRSKSNQYPNTSLVQIEGVNTQEEVNWY 49
>At1g07070.1 68414.m00753 60S ribosomal protein L35a (RPL35aA)
similar to ribosomal protein L35a GI:57118 from [Rattus
norvegicus]
Length = 112
Score = 76.2 bits (179), Expect = 1e-14
Identities = 37/69 (53%), Positives = 45/69 (65%)
Frame = +2
Query: 257 KHCVYVYRAKKRTPIPGGPRGKFTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRI 436
K Y+Y+AK + + R IWGKVTRPHGNSG VRAKF SNLP ++MG R+
Sbjct: 52 KRMAYIYKAKTKK--------NGSHYRCIWGKVTRPHGNSGVVRAKFTSNLPPKSMGSRV 103
Query: 437 RVMLYPSRI 463
RV +YPS I
Sbjct: 104 RVFMYPSNI 112
Score = 39.1 bits (87), Expect = 0.002
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +3
Query: 111 KASQPRHGRLYAKAVLTGYKPGLRNQHENTALLKVEGAKDRNDAVFY 251
K Q RLY + + GYK NQ+ NT+L++VEG + +Y
Sbjct: 3 KGRQGERVRLYVRGTILGYKRSKSNQYPNTSLVQVEGVNTTEEVSWY 49
>At3g55750.1 68416.m06194 60S ribosomal protein L35a (RPL35aD)
ribosomal protein L35a.e.c15, Saccharomyces cerevisiae,
PIR:S44069
Length = 111
Score = 74.5 bits (175), Expect = 3e-14
Identities = 36/69 (52%), Positives = 45/69 (65%)
Frame = +2
Query: 257 KHCVYVYRAKKRTPIPGGPRGKFTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRI 436
K Y+Y+AK + + R IWGKVTRPHGNSG VR+KF SNLP ++MG R+
Sbjct: 51 KRLAYIYKAKTKK--------NGSHYRCIWGKVTRPHGNSGVVRSKFTSNLPPKSMGARV 102
Query: 437 RVMLYPSRI 463
RV +YPS I
Sbjct: 103 RVFMYPSNI 111
Score = 38.7 bits (86), Expect = 0.002
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +3
Query: 111 KASQPRHGRLYAKAVLTGYKPGLRNQHENTALLKVEGAKDRNDAVFY 251
K Q RLY + + GYK NQ+ NT+L+++EG + + +Y
Sbjct: 2 KGRQGERVRLYVRGTVLGYKRSKSNQYPNTSLVQIEGVNTQEEVNWY 48
>At1g41880.1 68414.m04836 60S ribosomal protein L35a (RPL35aB)
identical to GB:CAB81600 from [Arabidopsis thaliana]
Length = 111
Score = 74.5 bits (175), Expect = 3e-14
Identities = 36/69 (52%), Positives = 45/69 (65%)
Frame = +2
Query: 257 KHCVYVYRAKKRTPIPGGPRGKFTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRI 436
K Y+Y+AK + + R IWGKVTRPHGNSG VR+KF SNLP ++MG R+
Sbjct: 51 KRLAYIYKAKTKK--------NGSHYRCIWGKVTRPHGNSGVVRSKFTSNLPPKSMGARV 102
Query: 437 RVMLYPSRI 463
RV +YPS I
Sbjct: 103 RVFMYPSNI 111
Score = 39.1 bits (87), Expect = 0.002
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +3
Query: 111 KASQPRHGRLYAKAVLTGYKPGLRNQHENTALLKVEGAKDRNDAVFY 251
K Q RLY + + GYK NQ+ NT+L+++EG + + +Y
Sbjct: 2 KGRQGERVRLYVRGTVLGYKRSKSNQYPNTSLIQIEGVNTQEEVNWY 48
>At1g21660.1 68414.m02711 expressed protein low similarity to
SP|O14976 Cyclin G-associated kinase (EC 2.7.1.-) {Homo
sapiens}; supporting cDNA gi|20466222|gb|AY099577.1|
Length = 523
Score = 28.3 bits (60), Expect = 2.9
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = -1
Query: 337 TQLGKFATGTSGNWCPLLSSVHI 269
T++ ++ATG GN LLSS+HI
Sbjct: 430 TEIRRWATGKEGNMRALLSSLHI 452
>At2g04350.2 68415.m00434 long-chain-fatty-acid--CoA ligase family
protein / long-chain acyl-CoA synthetase family protein
(LACS8) similar to LACS 4 [SP|O35547] from Rattus
norvegicus, LACS 4 [SP|O60488] from Homo sapiens;
contains Pfam HMM hit: AMP-binding enzymes PF00501
Length = 720
Score = 26.6 bits (56), Expect = 8.8
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -2
Query: 471 GS*ILEGYSITRILCPIAWAGRLDLNLARTLPELPCGRVTL 349
GS I +GY +T ++ D + R P LPCG V L
Sbjct: 469 GSPIGQGYGLTETCAGATFSEWDDPAVGRVGPPLPCGYVKL 509
>At2g04350.1 68415.m00433 long-chain-fatty-acid--CoA ligase family
protein / long-chain acyl-CoA synthetase family protein
(LACS8) similar to LACS 4 [SP|O35547] from Rattus
norvegicus, LACS 4 [SP|O60488] from Homo sapiens;
contains Pfam HMM hit: AMP-binding enzymes PF00501
Length = 720
Score = 26.6 bits (56), Expect = 8.8
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -2
Query: 471 GS*ILEGYSITRILCPIAWAGRLDLNLARTLPELPCGRVTL 349
GS I +GY +T ++ D + R P LPCG V L
Sbjct: 469 GSPIGQGYGLTETCAGATFSEWDDPAVGRVGPPLPCGYVKL 509
>At1g75160.1 68414.m08730 expressed protein contains Pfam profile
PF04788: Protein of unknown function (DUF620)
Length = 395
Score = 26.6 bits (56), Expect = 8.8
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +3
Query: 168 KPGLRNQHENTALLKVEGAKDRNDAVFYAASIASM 272
+ GL + +T L++V+ + +ND VF+ S+ S+
Sbjct: 295 RTGLLVKFGDTKLVRVKSGRGKNDGVFWETSMESI 329
>At1g25375.1 68414.m03149 metallo-beta-lactamase family protein
Length = 524
Score = 26.6 bits (56), Expect = 8.8
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +3
Query: 123 PRHGR--LYAKAVLTGYKPGLRNQHENTALLKVEGAKDRNDAV 245
P HGR L+ K +L GY R++ ++ V+GA+ D V
Sbjct: 386 PMHGRVNLWPKHMLCGYLKNRRSREKSILKATVDGAQTLYDIV 428
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,510,644
Number of Sequences: 28952
Number of extensions: 224310
Number of successful extensions: 662
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 829097472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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