Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30971
         (639 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein S9|Schiz...   145   4e-36
SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein S9|Schiz...   145   5e-36
SPAC19D5.05c |||U3 snoRNP-associated protein Imp3 |Schizosacchar...    35   0.011
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    29   0.57 
SPBC36.06c |spo9||farnesyl pyrophosphate synthetase|Schizosaccha...    28   1.3  
SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated |Schizosaccharom...    27   3.0  
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom...    25   7.0  
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy...    25   9.2  
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    25   9.2  

>SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein
           S9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 192

 Score =  145 bits (352), Expect = 4e-36
 Identities = 67/84 (79%), Positives = 77/84 (91%)
 Frame = +2

Query: 257 LVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQ 436
           LVR+G+LDE +MKLDYVL L+IEDFLERRLQTQVFK GLAKSIHHAR+LI QRHIRV KQ
Sbjct: 80  LVRLGILDESRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHHARVLIFQRHIRVGKQ 139

Query: 437 VVNIPSFIVRLDSGKHIDFSLKSP 508
           +VN+PSF+VRLD+ KHIDF+L SP
Sbjct: 140 IVNVPSFVVRLDAQKHIDFALSSP 163



 Score =  121 bits (291), Expect = 1e-28
 Identities = 55/74 (74%), Positives = 63/74 (85%)
 Frame = +3

Query: 33  PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 212
           P   SKTY  PRRPFE ARLD ELK+ GEYGLRNK E+WRV  TL++IR+AARELLTL+E
Sbjct: 5   PRKQSKTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDE 64

Query: 213 KDPKRLFEGNALLR 254
           KDPKRLFEGNA++R
Sbjct: 65  KDPKRLFEGNAIIR 78



 Score = 30.3 bits (65), Expect = 0.25
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = +1

Query: 511 GGGRPGRVKRKNLRKDR 561
           GGGRPGR KRK LR  +
Sbjct: 165 GGGRPGRCKRKRLRSQQ 181


>SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein
           S9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 191

 Score =  145 bits (351), Expect = 5e-36
 Identities = 67/84 (79%), Positives = 77/84 (91%)
 Frame = +2

Query: 257 LVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQ 436
           LVR+G+LDE +MKLDYVL L+IEDFLERRLQTQVFK GLAKSIHHAR+LI QRHIRV KQ
Sbjct: 80  LVRLGILDETRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHHARVLIFQRHIRVGKQ 139

Query: 437 VVNIPSFIVRLDSGKHIDFSLKSP 508
           +VN+PSF+VRLD+ KHIDF+L SP
Sbjct: 140 IVNVPSFVVRLDTQKHIDFALSSP 163



 Score =  121 bits (291), Expect = 1e-28
 Identities = 55/74 (74%), Positives = 63/74 (85%)
 Frame = +3

Query: 33  PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 212
           P   SKTY  PRRPFE ARLD ELK+ GEYGLRNK E+WRV  TL++IR+AARELLTL+E
Sbjct: 5   PRKQSKTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDE 64

Query: 213 KDPKRLFEGNALLR 254
           KDPKRLFEGNA++R
Sbjct: 65  KDPKRLFEGNAIIR 78



 Score = 30.7 bits (66), Expect = 0.19
 Identities = 13/20 (65%), Positives = 13/20 (65%)
 Frame = +1

Query: 511 GGGRPGRVKRKNLRKDRVAE 570
           GGGRPGR KRK LR     E
Sbjct: 165 GGGRPGRCKRKRLRSQEGGE 184


>SPAC19D5.05c |||U3 snoRNP-associated protein Imp3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 183

 Score = 34.7 bits (76), Expect = 0.011
 Identities = 19/69 (27%), Positives = 32/69 (46%)
 Frame = +2

Query: 257 LVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQ 436
           L  +G+L  K    D      +     RRL   + K  +++ +  A  LI Q H+RV   
Sbjct: 82  LFDMGILPSKSKMSDIENKANVSAICRRRLPVIMCKLRMSQVVSEATRLIEQGHVRVGPH 141

Query: 437 VVNIPSFIV 463
           V+  P+++V
Sbjct: 142 VITDPAYLV 150


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 29.1 bits (62), Expect = 0.57
 Identities = 18/44 (40%), Positives = 20/44 (45%)
 Frame = +1

Query: 319  D*GLLGASSADAGVQSWPGEVHPSCQNFDPAKAYSCPQASCEHP 450
            D GLLGA+S   GVQS PG   P      P    + P  S   P
Sbjct: 1521 DYGLLGAASPYKGVQS-PGYTSPFSSAMSPGYGLTSPSYSPSSP 1563


>SPBC36.06c |spo9||farnesyl pyrophosphate
           synthetase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 351

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 17/74 (22%), Positives = 35/74 (47%)
 Frame = +2

Query: 338 RRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPSVE 517
           R L       G+ ++I+ +++L     + +RK   N+P ++  LD+ + + F  +    E
Sbjct: 110 RGLDCWYLVVGVRRAINESQLLEACIPLLIRKYFRNMPYYVDLLDTFREVTFLTELGQQE 169

Query: 518 VVLDVSRGRTSART 559
            +L    G  S R+
Sbjct: 170 DLLSSRDGEASLRS 183


>SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 280

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +2

Query: 290 MKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHI 421
           +++D  L + +E FL++   TQ+    +A  I    + I Q H+
Sbjct: 132 VRMDGALWMAVEQFLQQEFDTQILPCLIAPEILLEFLKIWQNHV 175


>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +2

Query: 221 QEIVRR*CPSTCLVRIGVLDEKQMKLDYVLGLKIEDFLERR 343
           +E +R    S     +G++ EK M+LD V G K+E  ++RR
Sbjct: 86  KETIRMDSQSEISSTMGLVGEK-MELDAVKGRKVESRVDRR 125


>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 17/61 (27%), Positives = 30/61 (49%)
 Frame = +2

Query: 335 ERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPSV 514
           +  L+  V         H +R + ++R  +VRK++ ++   I RLD  + ID  L   SV
Sbjct: 17  QENLERDVTNTASEYIAHESREIEKKRLQKVRKEISSVKEKIRRLD--ERIDSRLTKISV 74

Query: 515 E 517
           +
Sbjct: 75  K 75


>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 13/53 (24%), Positives = 26/53 (49%)
 Frame = +3

Query: 6   LAKMVNNRVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYT 164
           ++K VN      FS +    +R  + A +D   + + E   RN++   +++YT
Sbjct: 470 ISKKVNCLYVEAFSSSDAVLQRIQDNAVVDSPTEELSEQAARNRKSNVKIEYT 522


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,407,169
Number of Sequences: 5004
Number of extensions: 47957
Number of successful extensions: 125
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)