Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30969
         (690 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q73KL8 Cluster: Racemase, Asp/Glu/Hydantoin family; n=1...    36   1.2  
UniRef50_A5UMT2 Cluster: Adhesin-like protein; n=1; Methanobrevi...    36   1.2  
UniRef50_UPI0000E47BCE Cluster: PREDICTED: similar to Retinal de...    35   1.6  

>UniRef50_Q73KL8 Cluster: Racemase, Asp/Glu/Hydantoin family; n=1;
           Treponema denticola|Rep: Racemase, Asp/Glu/Hydantoin
           family - Treponema denticola
          Length = 224

 Score = 35.5 bits (78), Expect = 1.2
 Identities = 22/81 (27%), Positives = 38/81 (46%)
 Frame = +1

Query: 313 DCDNIMFVFLNCIVIWVLDKSMQVQNLKENGLVILKHITFM*INNNVCNFEILPTIFLRK 492
           DC NI  +  N +  + +DK +Q  N ++N + I        I N +   EI+  + L+ 
Sbjct: 96  DCKNIAILAANGLAAYTIDKIIQKYNREKNTIPIGNMSIVQLIENGLPPAEIIKLLNLKG 155

Query: 493 GLCYYHMWTKSGHNLDSTILG 555
            L Y      + + +DS +LG
Sbjct: 156 FLSYLENIEINDYKIDSLMLG 176


>UniRef50_A5UMT2 Cluster: Adhesin-like protein; n=1;
           Methanobrevibacter smithii ATCC 35061|Rep: Adhesin-like
           protein - Methanobrevibacter smithii (strain PS / ATCC
           35061 / DSM 861)
          Length = 2036

 Score = 35.5 bits (78), Expect = 1.2
 Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
 Frame = -3

Query: 289 FHSTIITKHLNRKQSYKLQNKVLVITCIFQLRLTNNYSN*IEEVKKFQDLV-*KTILYPG 113
           F +TI+ + LN+ Q   L N  ++I    +++  NN++N I  +KK  DLV  +  +Y  
Sbjct: 188 FSNTIVFEKLNKIQLTNLTNNNIIIDN--KIKSNNNWTNSINSIKKALDLVENEGTIYLS 245

Query: 112 NIKILVSYKNINTLKNFTLDI 50
           N+ I +  +N N L N ++ I
Sbjct: 246 NLNI-IHDQNENILINKSVTI 265


>UniRef50_UPI0000E47BCE Cluster: PREDICTED: similar to Retinal
           degradation slow 2; n=1; Strongylocentrotus
           purpuratus|Rep: PREDICTED: similar to Retinal
           degradation slow 2 - Strongylocentrotus purpuratus
          Length = 327

 Score = 35.1 bits (77), Expect = 1.6
 Identities = 14/26 (53%), Positives = 19/26 (73%)
 Frame = +2

Query: 494 GCVIIICGLNLVIIWTALYLDLCVCN 571
           GCV+ +CGL L I+ TA YL+  +CN
Sbjct: 269 GCVMGLCGLQLSILLTAQYLNSSICN 294


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 603,778,452
Number of Sequences: 1657284
Number of extensions: 11566814
Number of successful extensions: 22650
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 21920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22648
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54132236449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)