Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30969
         (690 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr ...    30   0.36 
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   7.8  

>SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = -3

Query: 511 YDNNTAPFLKKLLAIFRNYRHYY*FT*KLYALESPNHSPLNFVLALIYLGP 359
           Y  NT P L+KL AIF  + H   +   L  L++ N +  N  + +  +GP
Sbjct: 454 YGTNTEPMLRKLKAIFITHLHSDHYLGLLNVLQAWNKANTNNSMHINIIGP 504


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +1

Query: 358  WVLDKSMQVQNLKENGLVILKHITF 432
            W+++  + V  +KE   ++LK +TF
Sbjct: 2215 WIMNSPVPVPTVKEKAALLLKMVTF 2239


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,713,081
Number of Sequences: 5004
Number of extensions: 55228
Number of successful extensions: 114
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)