Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30969
         (690 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52725| Best HMM Match : WD40 (HMM E-Value=2.1e-22)                  29   3.6  
SB_43084| Best HMM Match : ig (HMM E-Value=9.7e-23)                    29   4.7  
SB_57724| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                28   8.2  

>SB_52725| Best HMM Match : WD40 (HMM E-Value=2.1e-22)
          Length = 874

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = -3

Query: 229 KVLVITCIFQ--LRLTNNYSN*IEEVKKFQDLV*KTILYPGNIKILVSYKNINTLKNFTL 56
           K L+ TC     +R+ N  +  +E  K+FQ+      L+P  + ILV + +   L N  +
Sbjct: 163 KPLIATCSLDRSVRIWNYETCSLEAYKEFQEECYSIALHPSGLYILVGFSDKLRLMNLLI 222

Query: 55  D 53
           D
Sbjct: 223 D 223


>SB_43084| Best HMM Match : ig (HMM E-Value=9.7e-23)
          Length = 960

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -3

Query: 658 HT*YFEGSHLDSSFATWYTNGSEIIIRK 575
           H+   +G HL +SF  WY +G  +++ K
Sbjct: 410 HSLALDGEHLHASFEGWYHSGPMLVLSK 437


>SB_57724| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 3804

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -3

Query: 517  STYDNNTAPFLKKLLAIFRNYR 452
            S YDNN AP+L +L A  R +R
Sbjct: 1785 SAYDNNHAPYLARLHARHRGHR 1806


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,630,054
Number of Sequences: 59808
Number of extensions: 345182
Number of successful extensions: 613
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)