Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30969
         (690 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF058010-1|ABL84945.1| 1200|Drosophila melanogaster Nup133 protein.    29   6.0  
EF058009-1|ABL84944.1| 1200|Drosophila melanogaster Nup133 protein.    29   6.0  
EF058008-1|ABL84943.1| 1200|Drosophila melanogaster Nup133 protein.    29   6.0  
EF058007-1|ABL84942.1| 1200|Drosophila melanogaster Nup133 protein.    29   6.0  
EF058006-1|ABL84941.1| 1200|Drosophila melanogaster Nup133 protein.    29   6.0  
EF058005-1|ABL84940.1| 1200|Drosophila melanogaster Nup133 protein.    29   6.0  
EF058004-1|ABL84939.1| 1200|Drosophila melanogaster Nup133 protein.    29   6.0  
EF058003-1|ABL84938.1| 1200|Drosophila melanogaster Nup133 protein.    29   6.0  
EF058002-1|ABL84937.1| 1200|Drosophila melanogaster Nup133 protein.    29   6.0  
EF058001-1|ABL84936.1| 1200|Drosophila melanogaster Nup133 protein.    29   6.0  
EF058000-1|ABL84935.1| 1200|Drosophila melanogaster Nup133 protein.    29   6.0  
BT003226-1|AAO24981.1| 1200|Drosophila melanogaster LP09464p pro...    29   6.0  
AY051721-1|AAK93145.1| 1020|Drosophila melanogaster LD25077p pro...    29   6.0  
AE014297-3210|AAF56042.2| 1200|Drosophila melanogaster CG6958-PA...    29   6.0  

>EF058010-1|ABL84945.1| 1200|Drosophila melanogaster Nup133 protein.
          Length = 1200

 Score = 29.1 bits (62), Expect = 6.0
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -1

Query: 540 VQIMTRFSPHMIITQPLS*KNCWQYFEITDIIIDSHKSYM 421
           + I  R+  H +    L  +   Q FE+ D+++D  K+Y+
Sbjct: 829 IDISVRYGSHCVSETELKQQLYQQIFELIDLVLDGRKTYL 868


>EF058009-1|ABL84944.1| 1200|Drosophila melanogaster Nup133 protein.
          Length = 1200

 Score = 29.1 bits (62), Expect = 6.0
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -1

Query: 540 VQIMTRFSPHMIITQPLS*KNCWQYFEITDIIIDSHKSYM 421
           + I  R+  H +    L  +   Q FE+ D+++D  K+Y+
Sbjct: 829 IDISVRYGSHCVSETELKQQLYQQIFELIDLVLDGRKTYL 868


>EF058008-1|ABL84943.1| 1200|Drosophila melanogaster Nup133 protein.
          Length = 1200

 Score = 29.1 bits (62), Expect = 6.0
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -1

Query: 540 VQIMTRFSPHMIITQPLS*KNCWQYFEITDIIIDSHKSYM 421
           + I  R+  H +    L  +   Q FE+ D+++D  K+Y+
Sbjct: 829 IDISVRYGSHCVSETELKQQLYQQIFELIDLVLDGRKTYL 868


>EF058007-1|ABL84942.1| 1200|Drosophila melanogaster Nup133 protein.
          Length = 1200

 Score = 29.1 bits (62), Expect = 6.0
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -1

Query: 540 VQIMTRFSPHMIITQPLS*KNCWQYFEITDIIIDSHKSYM 421
           + I  R+  H +    L  +   Q FE+ D+++D  K+Y+
Sbjct: 829 IDISVRYGSHCVSETELKQQLYQQIFELIDLVLDGRKTYL 868


>EF058006-1|ABL84941.1| 1200|Drosophila melanogaster Nup133 protein.
          Length = 1200

 Score = 29.1 bits (62), Expect = 6.0
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -1

Query: 540 VQIMTRFSPHMIITQPLS*KNCWQYFEITDIIIDSHKSYM 421
           + I  R+  H +    L  +   Q FE+ D+++D  K+Y+
Sbjct: 829 IDISVRYGSHCVSETELKQQLYQQIFELIDLVLDGRKTYL 868


>EF058005-1|ABL84940.1| 1200|Drosophila melanogaster Nup133 protein.
          Length = 1200

 Score = 29.1 bits (62), Expect = 6.0
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -1

Query: 540 VQIMTRFSPHMIITQPLS*KNCWQYFEITDIIIDSHKSYM 421
           + I  R+  H +    L  +   Q FE+ D+++D  K+Y+
Sbjct: 829 IDISVRYGSHCVSETELKQQLYQQIFELIDLVLDGRKTYL 868


>EF058004-1|ABL84939.1| 1200|Drosophila melanogaster Nup133 protein.
          Length = 1200

 Score = 29.1 bits (62), Expect = 6.0
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -1

Query: 540 VQIMTRFSPHMIITQPLS*KNCWQYFEITDIIIDSHKSYM 421
           + I  R+  H +    L  +   Q FE+ D+++D  K+Y+
Sbjct: 829 IDISVRYGSHCVSETELKQQLYQQIFELIDLVLDGRKTYL 868


>EF058003-1|ABL84938.1| 1200|Drosophila melanogaster Nup133 protein.
          Length = 1200

 Score = 29.1 bits (62), Expect = 6.0
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -1

Query: 540 VQIMTRFSPHMIITQPLS*KNCWQYFEITDIIIDSHKSYM 421
           + I  R+  H +    L  +   Q FE+ D+++D  K+Y+
Sbjct: 829 IDISVRYGSHCVSETELKQQLYQQIFELIDLVLDGRKTYL 868


>EF058002-1|ABL84937.1| 1200|Drosophila melanogaster Nup133 protein.
          Length = 1200

 Score = 29.1 bits (62), Expect = 6.0
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -1

Query: 540 VQIMTRFSPHMIITQPLS*KNCWQYFEITDIIIDSHKSYM 421
           + I  R+  H +    L  +   Q FE+ D+++D  K+Y+
Sbjct: 829 IDISVRYGSHCVSETELKQQLYQQIFELIDLVLDGRKTYL 868


>EF058001-1|ABL84936.1| 1200|Drosophila melanogaster Nup133 protein.
          Length = 1200

 Score = 29.1 bits (62), Expect = 6.0
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -1

Query: 540 VQIMTRFSPHMIITQPLS*KNCWQYFEITDIIIDSHKSYM 421
           + I  R+  H +    L  +   Q FE+ D+++D  K+Y+
Sbjct: 829 IDISVRYGSHCVSETELKQQLYQQIFELIDLVLDGRKTYL 868


>EF058000-1|ABL84935.1| 1200|Drosophila melanogaster Nup133 protein.
          Length = 1200

 Score = 29.1 bits (62), Expect = 6.0
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -1

Query: 540 VQIMTRFSPHMIITQPLS*KNCWQYFEITDIIIDSHKSYM 421
           + I  R+  H +    L  +   Q FE+ D+++D  K+Y+
Sbjct: 829 IDISVRYGSHCVSETELKQQLYQQIFELIDLVLDGRKTYL 868


>BT003226-1|AAO24981.1| 1200|Drosophila melanogaster LP09464p
           protein.
          Length = 1200

 Score = 29.1 bits (62), Expect = 6.0
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -1

Query: 540 VQIMTRFSPHMIITQPLS*KNCWQYFEITDIIIDSHKSYM 421
           + I  R+  H +    L  +   Q FE+ D+++D  K+Y+
Sbjct: 829 IDISVRYGSHCVSETELKQQLYQQIFELIDLVLDGRKTYL 868


>AY051721-1|AAK93145.1| 1020|Drosophila melanogaster LD25077p
           protein.
          Length = 1020

 Score = 29.1 bits (62), Expect = 6.0
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -1

Query: 540 VQIMTRFSPHMIITQPLS*KNCWQYFEITDIIIDSHKSYM 421
           + I  R+  H +    L  +   Q FE+ D+++D  K+Y+
Sbjct: 649 IDISVRYGSHCVSETELKQQLYQQIFELIDLVLDGRKTYL 688


>AE014297-3210|AAF56042.2| 1200|Drosophila melanogaster CG6958-PA
           protein.
          Length = 1200

 Score = 29.1 bits (62), Expect = 6.0
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -1

Query: 540 VQIMTRFSPHMIITQPLS*KNCWQYFEITDIIIDSHKSYM 421
           + I  R+  H +    L  +   Q FE+ D+++D  K+Y+
Sbjct: 829 IDISVRYGSHCVSETELKQQLYQQIFELIDLVLDGRKTYL 868


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,514,099
Number of Sequences: 53049
Number of extensions: 502605
Number of successful extensions: 843
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3005453946
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)