Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30968
         (683 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb...    29   0.63 
SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual            26   5.8  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    26   5.8  
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po...    25   7.7  

>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 649

 Score = 29.1 bits (62), Expect = 0.63
 Identities = 10/24 (41%), Positives = 19/24 (79%)
 Frame = -3

Query: 279 KNEKLFVSPLILENGWTDLANFGL 208
           +N+ + VSP++L+ G+T LA +G+
Sbjct: 163 ENDNIVVSPILLQKGFTKLALYGI 186


>SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +2

Query: 524 FPPIYCIISI*MKAFEITNCKKLNLINKKQSP 619
           F  +YC+        E+T  KK N++  KQ P
Sbjct: 126 FGDVYCVDENWFTTSEVTEEKKSNVVEGKQEP 157


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +1

Query: 478 SIVSSQICPYLNLVSISPNLL-YYKHLNES 564
           +I S   CP LN ++++ NLL +Y++ N S
Sbjct: 609 NIASLSECPKLNSINVACNLLSFYEYSNPS 638


>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 483 CVVPDLSLFKSSLYFPQSTV 542
           C VPD++L  S +Y  QS V
Sbjct: 670 CTVPDIALAASQIYHAQSIV 689


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,507,471
Number of Sequences: 5004
Number of extensions: 47496
Number of successful extensions: 85
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)