Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30968
         (683 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0193 + 9543565-9543691,9544016-9544202,9544956-9545352           29   4.5  
09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,353...    28   6.0  
04_03_0214 + 12713865-12713973,12715780-12716011,12716556-127166...    28   7.9  

>05_03_0193 + 9543565-9543691,9544016-9544202,9544956-9545352
          Length = 236

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 8/18 (44%), Positives = 16/18 (88%)
 Frame = -1

Query: 245 SRTAGLIWLILVLNYSWK 192
           SR +GL+W++LV +++W+
Sbjct: 9   SRMSGLVWVVLVCSWTWR 26


>09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,
            3536083-3536226,3536974-3537375,3537499-3537721,
            3537830-3542368,3542480-3542599,3543005-3543038,
            3543922-3544102,3544198-3544815,3545022-3551098,
            3551139-3551304,3551508-3551614,3552056-3552178,
            3553417-3553642
          Length = 5100

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 88   GICPTEDTSKEKQNCLFLYNSEHFHIYS 171
            GI   +  SK+K +CL LY+    +IYS
Sbjct: 2119 GIAAYKPLSKDKAHCLLLYDDGSLNIYS 2146


>04_03_0214 +
           12713865-12713973,12715780-12716011,12716556-12716635,
           12716930-12717083,12717213-12717291,12717654-12717738,
           12718420-12718466,12720123-12720281
          Length = 314

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -3

Query: 678 KFA*IFLCLRIKCNQLLCDRGLCFLLIKLS 589
           +FA IF  L +  N L+ + G+CF+  KLS
Sbjct: 98  RFAEIFKALNLPLNILINNAGVCFVPFKLS 127


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,974,627
Number of Sequences: 37544
Number of extensions: 231623
Number of successful extensions: 362
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 362
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)