Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30966
         (756 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid...    27   2.9  
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S...    26   5.0  
SPAC56F8.13 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        26   6.7  

>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
           peptidyl-prolyl cis-trans isomerase
           Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 610

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +1

Query: 466 QRQIKKLIELNHSTYFWSTINFEIC 540
           Q+ +   +E++H   FWSTI++  C
Sbjct: 235 QKSVPTSLEVSHFENFWSTISYPDC 259


>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
           ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 957

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 650 NCFLKLFLIENVPKVLTNVFHG 715
           N F  L  IE +PKV  N++HG
Sbjct: 878 NRFWALKYIERLPKVQKNIYHG 899


>SPAC56F8.13 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 101

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 552 NTYANVILFLIWSIRHSNNIAIYYLLFSSA 641
           NT+   ILFL+  I+H+N +    +  SSA
Sbjct: 31  NTFLTNILFLLGLIKHTNQLTFPSIPHSSA 60


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,698,775
Number of Sequences: 5004
Number of extensions: 52596
Number of successful extensions: 96
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)