Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30966
         (756 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    25   0.58 
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   7.1  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   7.1  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    21   9.4  

>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 25.4 bits (53), Expect = 0.58
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 502 STYFWSTINFEICTEG 549
           ST +W T+ F +C EG
Sbjct: 375 STIYWFTVEFGLCKEG 390


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/28 (28%), Positives = 13/28 (46%)
 Frame = +1

Query: 448 RVLVCMQRQIKKLIELNHSTYFWSTINF 531
           RV+ CM+    K I +     +W  + F
Sbjct: 318 RVMACMRSVDAKTISVQQWNSYWGILGF 345


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/28 (28%), Positives = 13/28 (46%)
 Frame = +1

Query: 448 RVLVCMQRQIKKLIELNHSTYFWSTINF 531
           RV+ CM+    K I +     +W  + F
Sbjct: 318 RVMACMRSVDAKTISVQQWNSYWGILGF 345


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -1

Query: 282 NR*VYLRLPRREQLPVPFELY 220
           N+ +Y  +   EQ+PVP  +Y
Sbjct: 333 NKKLYYNIINIEQIPVPVPVY 353


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,814
Number of Sequences: 438
Number of extensions: 3910
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)