Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30966
         (756 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g08130.1 68414.m00892 DNA ligase / polydeoxyribonucleotide sy...    30   1.4  
At3g13290.1 68416.m01673 transducin family protein / WD-40 repea...    29   2.5  
At3g13300.2 68416.m01675 transducin family protein / WD-40 repea...    28   7.7  
At3g13300.1 68416.m01674 transducin family protein / WD-40 repea...    28   7.7  

>At1g08130.1 68414.m00892 DNA ligase / polydeoxyribonucleotide
           synthase [ATP] identical to SP|Q42572 DNA ligase (EC
           6.5.1.1) (Polydeoxyribonucleotide synthase [ATP])
           {Arabidopsis thaliana}; contains Pfam profiles: PF01068
           ATP dependent DNA ligase domain, PF04679 ATP dependent
           DNA ligase C terminal region, PF04675 DNA ligase N
           terminus
          Length = 790

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -1

Query: 528 INCRPKIC*MIQFYQFFYLPLHADEYTSHLMVSRYHRPWTSAMP 397
           + C P +C   Q  QF  + +      SHL +S  HR  +S+ P
Sbjct: 10  LRCIPSLCTKTQISQFSSVLISFSRQISHLRLSSCHRAMSSSRP 53


>At3g13290.1 68416.m01673 transducin family protein / WD-40 repeat
            family protein contains 2 WD-40 repeats (PF00400);
            autoantigen locus HUMAUTANT (GI:533202) [Homo sapiens]
            and autoantigen locus HSU17474 (GI:596134) [Homo sapiens]
          Length = 1322

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = -2

Query: 617  NCYIVRMSNGP-N*K*NYIGISIDPSVQISKLIVDQKYVE*FSS 489
            N  + ++SNGP       +   +DP+ ++S+LI ++KY E F+S
Sbjct: 1164 NPLVTQLSNGPLGALLEKVEAPMDPTTELSRLISERKYEESFTS 1207


>At3g13300.2 68416.m01675 transducin family protein / WD-40 repeat
            family protein contains 2 WD-40 repeats (PF00400);
            autoantigen locus HUMAUTANT (GI:533202) [Homo sapiens]
            and autoantigen locus HSU17474 (GI:596134) [Homo sapiens]
          Length = 1309

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = -2

Query: 617  NCYIVRMSNGP-N*K*NYIGISIDPSVQISKLIVDQKYVE*FSS 489
            N  + ++S GP       +   +DP+ ++S+LI ++KY E F+S
Sbjct: 1151 NSLVTQLSGGPLGALLEKVEAPMDPTTELSRLISERKYEESFTS 1194


>At3g13300.1 68416.m01674 transducin family protein / WD-40 repeat
            family protein contains 2 WD-40 repeats (PF00400);
            autoantigen locus HUMAUTANT (GI:533202) [Homo sapiens]
            and autoantigen locus HSU17474 (GI:596134) [Homo sapiens]
          Length = 1344

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = -2

Query: 617  NCYIVRMSNGP-N*K*NYIGISIDPSVQISKLIVDQKYVE*FSS 489
            N  + ++S GP       +   +DP+ ++S+LI ++KY E F+S
Sbjct: 1186 NSLVTQLSGGPLGALLEKVEAPMDPTTELSRLISERKYEESFTS 1229


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,536,406
Number of Sequences: 28952
Number of extensions: 257623
Number of successful extensions: 447
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 447
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)